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Aliases for PIR41002 Gene

Subcategory (RNA class) for PIR41002 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR41002 Gene

No Aliases found

ORGUL Members for PIR41002 Gene

Previous GeneCards Identifiers for PIR41002 Gene

  • GC12M054631

No data available for External Ids for PIR41002 Gene

Summaries for PIR41002 Gene

GeneCards Summary for PIR41002 Gene

PIR41002 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR41002 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR41002 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR41002 Gene

Genomics for PIR41002 Gene

GeneHancer (GH) Regulatory Elements for PIR41002 Gene

Promoters and enhancers for PIR41002 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J108880 Promoter 1 EPDnew 0.4 -11.4 -11382 0.1 SP1 RXRA RCOR2 GABPA IRF2 ZBTB26 YY1 SAP130 JUND GABPB1 DAO GC12M108869 PIR41002 GC12M108908
GH12J108865 Enhancer 0.6 Ensembl 0.7 +2.5 2492 1.2 IKZF1 ATF1 FOSL1 CEBPB KLF1 ADNP JUN ZBTB33 ATF2 POLR3A SART3 CORO1C GC12M108869 PIR41002 DAO GC12M108860 PIR60393
GH12J108860 Enhancer 0.8 ENCODE dbSUPER 0.4 +7.9 7929 0.5 IKZF1 IKZF2 DPF2 EED NBN IRF4 EBF1 ATF7 TARDBP DAO GC12M108860 PIR60393 CORO1C GC12M108869 PIR41002
GH12J108903 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 -37.1 -37108 7.2 MAFK ZNF544 ZNF512 ZNF148 ZNF311 ZNF248 PKNOX1 ZIK1 ZFHX2 ZNF621 ALKBH2 SART3 USP30 SSH1 DAO SVOP CORO1C SELPLG GC12M108908 GC12M108869
GH12J108861 Enhancer 0.7 ENCODE dbSUPER 0.4 +6.6 6613 0.2 IKZF1 RELA BCL11A SMARCA5 IRF4 EBF1 ZNF664 CORO1C DAO GC12M108860 PIR60393 GC12M108869 PIR41002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR41002 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR41002 Gene

Genomic Locations for PIR41002 Gene
chr12:108,868,664-108,868,693
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand
chr12:54,631,220-54,631,249
(GRCh37/hg19)
Size:
30 bases
Orientation:
Minus strand

Genomic View for PIR41002 Gene

Genes around PIR41002 on UCSC Golden Path with GeneCards custom track

PIR41002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR41002 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR41002 Gene

Proteins for PIR41002 Gene

Post-translational modifications for PIR41002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR41002 Gene

Domains & Families for PIR41002 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR41002 Gene

Function for PIR41002 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR41002 Gene

Localization for PIR41002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR41002 Gene

Pathways & Interactions for PIR41002 Gene

PathCards logo

SuperPathways for PIR41002 Gene

No Data Available

Interacting Proteins for PIR41002 Gene

Gene Ontology (GO) - Biological Process for PIR41002 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR41002 Gene

Drugs & Compounds for PIR41002 Gene

No Compound Related Data Available

Transcripts for PIR41002 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR41002 Gene

No ASD Table

Relevant External Links for PIR41002 Gene

GeneLoc Exon Structure for
PIR41002

No data available for mRNA/cDNA for PIR41002 Gene

Expression for PIR41002 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR41002 Gene

Orthologs for PIR41002 Gene

No data available for Orthologs and Evolution for PIR41002 Gene

Paralogs for PIR41002 Gene

No data available for Paralogs for PIR41002 Gene

Variants for PIR41002 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR41002 Gene

Disorders for PIR41002 Gene

No disorders were found for PIR41002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR41002 Gene

Publications for PIR41002 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR41002 Gene

Products for PIR41002 Gene

Sources for PIR41002 Gene

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