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Aliases for PIR40977 Gene

Subcategory (RNA class) for PIR40977 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR40977 Gene

No Aliases found

ORGUL Members for PIR40977 Gene

Previous GeneCards Identifiers for PIR40977 Gene

  • GC04P001321

No data available for External Ids for PIR40977 Gene

Summaries for PIR40977 Gene

GeneCards Summary for PIR40977 Gene

PIR40977 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR40977 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR40977 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR40977 Gene

Genomics for PIR40977 Gene

GeneHancer (GH) Regulatory Elements for PIR40977 Gene

Promoters and enhancers for PIR40977 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J001328 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 +2.4 2403 3.1 GATA3 MAEA CRIPAK UVSSA CTBP1 ENSG00000254094 PIR40977 GC04M001338
GH04J001323 Enhancer 0.6 ENCODE 0.7 -2.6 -2612 4.6 GFI1B SALL2 ZEB1 ZNF791 JUND POLR2A TARDBP FOSL2 ZBTB17 MAEA CRIPAK PIGG PCGF3 ENSG00000272588 CTBP1-DT HAUS3 CTBP1 CPLX1 PIR40977
GH04J001336 Enhancer 0.8 ENCODE dbSUPER 0.4 +9.6 9615 1.4 PKNOX1 ESRRA KLF17 ZSCAN21 IKZF5 SCRT2 RBM22 CREB1 ZBTB33 ZNF600 CRIPAK MAEA CTBP1 GC04M001338 PIR40977
GH04J001337 Enhancer 0.6 ENCODE 0.4 +8.4 8377 0.8 CEBPB CEBPG GABPA PPARGC1A ZSCAN23 ZSCAN21 POLR2A HDAC2 CEBPA KDM1A CRIPAK CTBP1 GC04M001338 PIR40977 MAEA
GH04J001332 Enhancer 0.2 ENCODE 0.7 +4.3 4266 0.5 MAEA CTBP1 PIR40977 GC04M001338
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR40977 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR40977 Gene

Genomic Locations for PIR40977 Gene
chr4:1,328,072-1,328,098
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr4:1,321,860-1,321,886
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR40977 Gene

Genes around PIR40977 on UCSC Golden Path with GeneCards custom track

PIR40977 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR40977 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR40977 Gene

Function for PIR40977 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR40977 Gene

Localization for PIR40977 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR40977 Gene

Pathways & Interactions for PIR40977 Gene

SuperPathways for PIR40977 Gene

No Data Available

Interacting Proteins for PIR40977 Gene

Gene Ontology (GO) - Biological Process for PIR40977 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR40977 Gene

Drugs & Compounds for PIR40977 Gene

No Compound Related Data Available

Transcripts for PIR40977 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR40977 Gene

No ASD Table

Relevant External Links for PIR40977 Gene

GeneLoc Exon Structure for
PIR40977

No data available for mRNA/cDNA for PIR40977 Gene

Expression for PIR40977 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR40977 Gene

Orthologs for PIR40977 Gene

No data available for Orthologs and Evolution for PIR40977 Gene

Paralogs for PIR40977 Gene

No data available for Paralogs for PIR40977 Gene

Variants for PIR40977 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR40977 Gene

Disorders for PIR40977 Gene

No disorders were found for PIR40977 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR40977 Gene

Publications for PIR40977 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR40977 Gene

Sources for PIR40977 Gene

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