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Aliases for PIR40952 Gene

Subcategory (RNA class) for PIR40952 Gene

piRNA

Quality Score for this RNA gene is

6.2

Aliases for PIR40952 Gene

No Aliases found

ORGUL Members for PIR40952 Gene

Previous GeneCards Identifiers for PIR40952 Gene

  • GC16P002259

No data available for External Ids for PIR40952 Gene

Summaries for PIR40952 Gene

GeneCards Summary for PIR40952 Gene

PIR40952 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR40952 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR40952

Additional gene information for PIR40952 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR40952 Gene

Genomics for PIR40952 Gene

GeneHancer (GH) Regulatory Elements for PIR40952 Gene

Promoters and enhancers for PIR40952 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I002204 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.8 -2.8 -2763 2.5 HDGF CLOCK MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 MLST8 CRAMP1 E4F1 ZNF213-AS1 UNKL TBL3 UBE2I TSC2 TELO2 NME3
GH16I002210 Enhancer 0.8 ENCODE 0.8 +2.4 2398 1 HDAC1 PKNOX1 ARID4B THRB RARA POLR2B GLIS2 EGR1 PHF21A SP5 ENSG00000261532 BRICD5 ZNF213-AS1 PIR40952
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR40952 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR40952 Gene

Genomic Locations for PIR40952 Gene
chr16:2,208,505-2,208,540
(GRCh38/hg38)
Size:
36 bases
Orientation:
Plus strand
chr16:2,258,506-2,258,541
(GRCh37/hg19)

Genomic View for PIR40952 Gene

Genes around PIR40952 on UCSC Golden Path with GeneCards custom track

PIR40952 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR40952 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR40952 Gene

ORGUL Member Location for PIR40952 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR40952 Gene

Proteins for PIR40952 Gene

Post-translational modifications for PIR40952 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR40952 Gene

Domains & Families for PIR40952 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR40952 Gene

Function for PIR40952 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR40952 Gene

Localization for PIR40952 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR40952 Gene

Pathways & Interactions for PIR40952 Gene

SuperPathways for PIR40952 Gene

No Data Available

Interacting Proteins for PIR40952 Gene

Gene Ontology (GO) - Biological Process for PIR40952 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR40952 Gene

Drugs & Compounds for PIR40952 Gene

No Compound Related Data Available

Transcripts for PIR40952 Gene

fRNAdb Secondary structures for PIR40952 Gene

  • FR396365
  • FR318300

Alternative Splicing Database (ASD) splice patterns (SP) for PIR40952 Gene

No ASD Table

Relevant External Links for PIR40952 Gene

GeneLoc Exon Structure for
PIR40952

No data available for mRNA/cDNA for PIR40952 Gene

Expression for PIR40952 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR40952 Gene

Orthologs for PIR40952 Gene

No data available for Orthologs and Evolution for PIR40952 Gene

Paralogs for PIR40952 Gene

No data available for Paralogs for PIR40952 Gene

Variants for PIR40952 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR40952 Gene

Disorders for PIR40952 Gene

No disorders were found for PIR40952 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR40952 Gene

Publications for PIR40952 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR40952 Gene

Sources for PIR40952 Gene

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