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Aliases for PIR40920 Gene

Subcategory (RNA class) for PIR40920 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR40920 Gene

No Aliases found

ORGUL Members for PIR40920 Gene

Previous GeneCards Identifiers for PIR40920 Gene

  • GC12M123942

No data available for External Ids for PIR40920 Gene

Summaries for PIR40920 Gene

GeneCards Summary for PIR40920 Gene

PIR40920 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR40920 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR40920 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR40920 Gene

Genomics for PIR40920 Gene

GeneHancer (GH) Regulatory Elements for PIR40920 Gene

Promoters and enhancers for PIR40920 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J123457 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 -0.8 -796 2.8 MLX FEZF1 DMAP1 YY1 ZNF213 E2F8 SP3 MEF2D ZNF610 GLIS1 SNRNP35 PIR40920 RSRC2 DDX55 ZCCHC8 EIF2B1 KNTC1 ATP6V0A2 RILPL2 TCTN2
GH12J123470 Enhancer 1.1 ENCODE dbSUPER 0.4 -13.7 -13673 1.6 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 FOS NFKBIZ SP5 ZHX2 DDX55 RILPL2 LOC101927415 TMED2 RILPL1 EIF2B1 GTF2H3 PITPNM2 SNRNP35 PIR40920
GH12J123461 Enhancer 0.4 dbSUPER 0.7 -4.1 -4084 1.3 POLR2A RCOR1 CHD2 RILPL2 LOC101927415 RILPL1 SNRNP35 CDK2AP1 PIR40920 ENSG00000274427
GH12J123477 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.3 -20.8 -20773 2.5 ZNF121 JUN MAX MYC RILPL1 DDX55 LOC101927415 SNRNP35 PITPNM2 PIR40920 ENSG00000274427
GH12J123494 Enhancer 0.9 ENCODE dbSUPER 0.3 -36.9 -36944 0.6 HDAC1 HDGF GTF2F1 MAX ZNF316 FOXK2 NFE2 L3MBTL2 MAFG DPF2 RILPL1 DDX55 ENSG00000274427 PIR40920
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR40920 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR40920 Gene

Genomic Locations for PIR40920 Gene
chr12:123,458,107-123,458,134
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr12:123,942,654-123,942,681
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR40920 Gene

Genes around PIR40920 on UCSC Golden Path with GeneCards custom track

PIR40920 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR40920 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR40920 Gene

Function for PIR40920 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR40920 Gene

Localization for PIR40920 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR40920 Gene

Pathways & Interactions for PIR40920 Gene

SuperPathways for PIR40920 Gene

No Data Available

Interacting Proteins for PIR40920 Gene

Gene Ontology (GO) - Biological Process for PIR40920 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR40920 Gene

Drugs & Compounds for PIR40920 Gene

No Compound Related Data Available

Transcripts for PIR40920 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR40920 Gene

No ASD Table

Relevant External Links for PIR40920 Gene

GeneLoc Exon Structure for
PIR40920

No data available for mRNA/cDNA for PIR40920 Gene

Expression for PIR40920 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR40920 Gene

Orthologs for PIR40920 Gene

No data available for Orthologs and Evolution for PIR40920 Gene

Paralogs for PIR40920 Gene

No data available for Paralogs for PIR40920 Gene

Variants for PIR40920 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR40920 Gene

Disorders for PIR40920 Gene

No disorders were found for PIR40920 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR40920 Gene

Publications for PIR40920 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR40920 Gene

Sources for PIR40920 Gene

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