Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR40887 Gene

Subcategory (RNA class) for PIR40887 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR40887 Gene

No Aliases found

ORGUL Members for PIR40887 Gene

Previous GeneCards Identifiers for PIR40887 Gene

  • GC21M045974
  • GC21M044562
  • GC21M044679
  • GC21M045814
  • GC21M044814
  • GC21M044947
  • GC21M045071
  • GC21M045213
  • GC21M045354
  • GC21M045480
  • GC21M045629
  • GC21M045729

No data available for External Ids for PIR40887 Gene

Summaries for PIR40887 Gene

GeneCards Summary for PIR40887 Gene

PIR40887 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR40887 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR40887

Additional gene information for PIR40887 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR40887 Gene

Genomics for PIR40887 Gene

GeneHancer (GH) Regulatory Elements for PIR40887 Gene

Promoters and enhancers for PIR40887 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J044491 Enhancer 0.5 Ensembl 600.7 +1.8 1818 1.2 POLR2A ZNF561 SCRT2 TRIM28 GC21M046618 GC21M046624 GC21M046625 GC21M046628 GC21M046629 GC21M046631 GC21M046851 GC21M046853 GC21M046854 GC21M046856
GH21J044494 Enhancer 0.3 FANTOM5 600.7 -0.1 -64 0.1 ENSG00000277352 GC21M046618 GC21M046624 GC21M046851 GC21M046853 GC21M046854 GC21M046861 GC21M046863 GC21M046867 GC21M046878
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR40887 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR40887 Gene

Genomic Locations for PIR40887 Gene
chr21:44,494,188-44,494,219
(GRCh38/hg38)
Size:
32 bases
Orientation:
Minus strand

Genomic View for PIR40887 Gene

Genes around PIR40887 on UCSC Golden Path with GeneCards custom track

PIR40887 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR40887 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR40887 Gene

ORGUL Member Location for PIR40887 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR40887 Gene

Proteins for PIR40887 Gene

Post-translational modifications for PIR40887 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR40887 Gene

Domains & Families for PIR40887 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR40887 Gene

Function for PIR40887 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR40887 Gene

Localization for PIR40887 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR40887 Gene

Pathways & Interactions for PIR40887 Gene

PathCards logo

SuperPathways for PIR40887 Gene

No Data Available

Interacting Proteins for PIR40887 Gene

Gene Ontology (GO) - Biological Process for PIR40887 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR40887 Gene

Drugs & Compounds for PIR40887 Gene

No Compound Related Data Available

Transcripts for PIR40887 Gene

fRNAdb Secondary structures for PIR40887 Gene

  • FR036857

Alternative Splicing Database (ASD) splice patterns (SP) for PIR40887 Gene

No ASD Table

Relevant External Links for PIR40887 Gene

GeneLoc Exon Structure for
PIR40887

No data available for mRNA/cDNA for PIR40887 Gene

Expression for PIR40887 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR40887 Gene

Orthologs for PIR40887 Gene

No data available for Orthologs and Evolution for PIR40887 Gene

Paralogs for PIR40887 Gene

No data available for Paralogs for PIR40887 Gene

Variants for PIR40887 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR40887 Gene

Disorders for PIR40887 Gene

No disorders were found for PIR40887 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR40887 Gene

Publications for PIR40887 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR40887 Gene

Products for PIR40887 Gene

Sources for PIR40887 Gene

Content
Loading form....