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Aliases for PIR40798 Gene

Subcategory (RNA class) for PIR40798 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR40798 Gene

No Aliases found

ORGUL Members for PIR40798 Gene

No data available for External Ids for PIR40798 Gene

Summaries for PIR40798 Gene

GeneCards Summary for PIR40798 Gene

PIR40798 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR40798 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR40798 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR40798 Gene

Genomics for PIR40798 Gene

GeneHancer (GH) Regulatory Elements for PIR40798 Gene

Promoters and enhancers for PIR40798 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J006412 Enhancer 0.4 dbSUPER 600.7 -1.9 -1916 1.3 IKZF1 MNT L3MBTL2 PIR40798 APBB1
GH11J006409 Enhancer 0.3 dbSUPER 600.7 +0.3 250 2.8 ZNF513 PIR40798 APBB1 GC11P006400
GH11J006418 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 0.4 -7.8 -7807 3 ZFX ZNF148 BACH1 YY1 ZNF639 GLIS2 POLR2A RNF2 ZBTB8A LARP7 APBB1 PIR40798
GH11J006400 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.4 +8.1 8128 6.3 SP1 CREM MLLT1 IKZF1 RFX1 IKZF2 POLR2A ZNF24 SOX13 CBFB SMPD1 HPX TIMM10B ARFIP2 CAVIN3 APBB1 GC11P006400 PIR40798
GH11J006413 Enhancer 0.7 ENCODE dbSUPER 0.7 -3.9 -3858 2 IKZF1 RUNX3 MNT BHLHE40 EGR2 L3MBTL2 APBB1 PIR40798
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR40798 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR40798 Gene

Genomic Locations for PIR40798 Gene
chr11:6,411,066-6,411,093
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr11:6,432,296-6,432,323
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR40798 Gene

Genes around PIR40798 on UCSC Golden Path with GeneCards custom track

PIR40798 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR40798 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR40798 Gene

Proteins for PIR40798 Gene

Post-translational modifications for PIR40798 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR40798 Gene

Domains & Families for PIR40798 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR40798 Gene

Function for PIR40798 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR40798 Gene

Localization for PIR40798 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR40798 Gene

Pathways & Interactions for PIR40798 Gene

PathCards logo

SuperPathways for PIR40798 Gene

No Data Available

Interacting Proteins for PIR40798 Gene

Gene Ontology (GO) - Biological Process for PIR40798 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR40798 Gene

Drugs & Compounds for PIR40798 Gene

No Compound Related Data Available

Transcripts for PIR40798 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR40798 Gene

No ASD Table

Relevant External Links for PIR40798 Gene

GeneLoc Exon Structure for
PIR40798

No data available for mRNA/cDNA for PIR40798 Gene

Expression for PIR40798 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR40798 Gene

Orthologs for PIR40798 Gene

No data available for Orthologs and Evolution for PIR40798 Gene

Paralogs for PIR40798 Gene

No data available for Paralogs for PIR40798 Gene

Variants for PIR40798 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR40798 Gene

Disorders for PIR40798 Gene

No disorders were found for PIR40798 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR40798 Gene

Publications for PIR40798 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR40798 Gene

Products for PIR40798 Gene

Sources for PIR40798 Gene

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