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Aliases for PIR40259 Gene

Subcategory (RNA class) for PIR40259 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR40259 Gene

No Aliases found

ORGUL Members for PIR40259 Gene

Previous GeneCards Identifiers for PIR40259 Gene

  • GC22P035848

No data available for External Ids for PIR40259 Gene

Summaries for PIR40259 Gene

GeneCards Summary for PIR40259 Gene

PIR40259 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR40259 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR40259 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR40259 Gene

Genomics for PIR40259 Gene

GeneHancer (GH) Regulatory Elements for PIR40259 Gene

Promoters and enhancers for PIR40259 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J035451 Enhancer 0.7 ENCODE dbSUPER 650.7 0.0 -31 1.9 SMARCE1 ZNF687 GATA3 RCOR1 ZIC2 ZNF48 FOXA1 PIR40259 RASD2 MCM5
GH22J035453 Enhancer 0.5 dbSUPER 650.7 +1.8 1782 0.8 CTCF ZNF768 ZNF366 ZFP36 ZMYM3 PIR40259 LOC100131536 MCM5
GH22J035450 Enhancer 0.5 dbSUPER 650.7 -1.9 -1934 0.4 KLF1 GLIS1 ZNF398 ZIC2 PIR40259 MCM5
GH22J035447 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -4.4 -4399 1 HDAC1 ZIC2 ZFHX2 FOXK2 EGR1 PATZ1 VEZF1 NFE2 RUNX3 SMARCE1 PIR40259 MCM5
GH22J035409 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -41.6 -41580 3 HDGF PKNOX1 FOXA2 RB1 STAT5A YBX1 BATF KLF5 IRF4 RAD21 RASD2 MCM5 PIR40259
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR40259 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR40259 Gene

Genomic Locations for PIR40259 Gene
chr22:35,452,471-35,452,498
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr22:35,848,464-35,848,491
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR40259 Gene

Genes around PIR40259 on UCSC Golden Path with GeneCards custom track

PIR40259 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR40259 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR40259 Gene

Function for PIR40259 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR40259 Gene

Localization for PIR40259 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR40259 Gene

Pathways & Interactions for PIR40259 Gene

SuperPathways for PIR40259 Gene

No Data Available

Interacting Proteins for PIR40259 Gene

Gene Ontology (GO) - Biological Process for PIR40259 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR40259 Gene

Drugs & Compounds for PIR40259 Gene

No Compound Related Data Available

Transcripts for PIR40259 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR40259 Gene

No ASD Table

Relevant External Links for PIR40259 Gene

GeneLoc Exon Structure for
PIR40259

No data available for mRNA/cDNA for PIR40259 Gene

Expression for PIR40259 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR40259 Gene

Orthologs for PIR40259 Gene

No data available for Orthologs and Evolution for PIR40259 Gene

Paralogs for PIR40259 Gene

No data available for Paralogs for PIR40259 Gene

Variants for PIR40259 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR40259 Gene

Disorders for PIR40259 Gene

No disorders were found for PIR40259 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR40259 Gene

Publications for PIR40259 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR40259 Gene

Sources for PIR40259 Gene

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