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Aliases for PIR39921 Gene

Subcategory (RNA class) for PIR39921 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR39921 Gene

No Aliases found

ORGUL Members for PIR39921 Gene

No data available for External Ids for PIR39921 Gene

Summaries for PIR39921 Gene

GeneCards Summary for PIR39921 Gene

PIR39921 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR39921 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR39921 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR39921 Gene

Genomics for PIR39921 Gene

GeneHancer (GH) Regulatory Elements for PIR39921 Gene

Promoters and enhancers for PIR39921 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J034200 Enhancer 0.5 Ensembl 600.7 +1.1 1134 0.2 PRDM10 ZBTB44 ZXDB OSR2 ZNF580 OVOL3 ZNF843 PIR39921 ABTB2 ENSG00000201867 GC11M034177
GH11J034203 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.7 -4.9 -4866 7 ELF3 ZKSCAN8 CEBPG ZSCAN21 ZNF24 MAFK TRIM24 ELF1 PRDM1 SMARCA4 ABTB2 ENSG00000241255 PIR39921 GC11M034177
GH11J034213 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -13.0 -12965 2.4 ZNF121 TFE3 SP1 ZNF644 RXRA ZNF600 SOX13 ZIC2 CEBPA GATAD2A ABTB2 PIR39921 GC11M034177
GH11J034222 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -22.2 -22186 3.2 ZNF121 CEBPG SP7 ZNF644 MZF1 GLIS2 PKNOX1 ZNF488 ZNF221 ZBTB8A FBXO3 ABTB2 PIR39921 GC11M034177
GH11J034241 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -42.3 -42266 4.6 SP1 CBFA2T2 NKRF ZNF687 MAFK JUND RELA CREM MLLT1 SMARCA4 ABTB2 PIR39921 GC11M034177
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR39921 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR39921 Gene

Genomic Locations for PIR39921 Gene
chr11:34,201,609-34,201,635
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr11:34,223,156-34,223,182
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR39921 Gene

Genes around PIR39921 on UCSC Golden Path with GeneCards custom track

PIR39921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR39921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR39921 Gene

Proteins for PIR39921 Gene

Post-translational modifications for PIR39921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR39921 Gene

Domains & Families for PIR39921 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR39921 Gene

Function for PIR39921 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR39921 Gene

Localization for PIR39921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR39921 Gene

Pathways & Interactions for PIR39921 Gene

PathCards logo

SuperPathways for PIR39921 Gene

No Data Available

Interacting Proteins for PIR39921 Gene

Gene Ontology (GO) - Biological Process for PIR39921 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR39921 Gene

Drugs & Compounds for PIR39921 Gene

No Compound Related Data Available

Transcripts for PIR39921 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR39921 Gene

No ASD Table

Relevant External Links for PIR39921 Gene

GeneLoc Exon Structure for
PIR39921

No data available for mRNA/cDNA for PIR39921 Gene

Expression for PIR39921 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR39921 Gene

Orthologs for PIR39921 Gene

No data available for Orthologs and Evolution for PIR39921 Gene

Paralogs for PIR39921 Gene

No data available for Paralogs for PIR39921 Gene

Variants for PIR39921 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR39921 Gene

Disorders for PIR39921 Gene

No disorders were found for PIR39921 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR39921 Gene

Publications for PIR39921 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR39921 Gene

Products for PIR39921 Gene

Sources for PIR39921 Gene

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