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Aliases for PIR39839 Gene

Subcategory (RNA class) for PIR39839 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR39839 Gene

No Aliases found

ORGUL Members for PIR39839 Gene

Previous GeneCards Identifiers for PIR39839 Gene

  • GC12P006270

No data available for External Ids for PIR39839 Gene

Summaries for PIR39839 Gene

GeneCards Summary for PIR39839 Gene

PIR39839 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR39839 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR39839 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR39839 Gene

Genomics for PIR39839 Gene

GeneHancer (GH) Regulatory Elements for PIR39839 Gene

Promoters and enhancers for PIR39839 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J006161 Enhancer 0.9 Ensembl ENCODE dbSUPER 650.7 +0.2 243 1.3 POLR2A IKZF1 PRDM10 NR2F2 ENSG00000255775 GC12P006162 PIR39839 PIR35613 CD9 VWF PIR38862
GH12J006166 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.6 6597 3.9 PKNOX1 ATF1 ARNT TCF12 ZNF766 ZNF207 ZNF143 ATF7 FOS RUNX3 PIR38862 CD9 VWF ATN1 NTF3 TNFRSF1A TAPBPL VAMP1 PIR39839 LOC105369623
GH12J006165 Enhancer 0.5 ENCODE dbSUPER 0.7 +4.1 4067 0.1 RXRA CD9 VWF PIR38862 PIR39839
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR39839 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR39839 Gene

Genomic Locations for PIR39839 Gene
chr12:6,161,493-6,161,520
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr12:6,270,659-6,270,686
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR39839 Gene

Genes around PIR39839 on UCSC Golden Path with GeneCards custom track

PIR39839 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR39839 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR39839 Gene

Function for PIR39839 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR39839 Gene

Localization for PIR39839 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR39839 Gene

Pathways & Interactions for PIR39839 Gene

SuperPathways for PIR39839 Gene

No Data Available

Interacting Proteins for PIR39839 Gene

Gene Ontology (GO) - Biological Process for PIR39839 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR39839 Gene

Drugs & Compounds for PIR39839 Gene

No Compound Related Data Available

Transcripts for PIR39839 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR39839 Gene

No ASD Table

Relevant External Links for PIR39839 Gene

GeneLoc Exon Structure for
PIR39839

No data available for mRNA/cDNA for PIR39839 Gene

Expression for PIR39839 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR39839 Gene

Orthologs for PIR39839 Gene

No data available for Orthologs and Evolution for PIR39839 Gene

Paralogs for PIR39839 Gene

No data available for Paralogs for PIR39839 Gene

Variants for PIR39839 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR39839 Gene

Disorders for PIR39839 Gene

No disorders were found for PIR39839 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR39839 Gene

Publications for PIR39839 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR39839 Gene

Sources for PIR39839 Gene

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