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Aliases for PIR39582 Gene

Subcategory (RNA class) for PIR39582 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR39582 Gene

No Aliases found

ORGUL Members for PIR39582 Gene

Previous GeneCards Identifiers for PIR39582 Gene

  • GC01P145249

No data available for External Ids for PIR39582 Gene

Summaries for PIR39582 Gene

GeneCards Summary for PIR39582 Gene

PIR39582 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR39582 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR39582 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR39582 Gene

Genomics for PIR39582 Gene

GeneHancer (GH) Regulatory Elements for PIR39582 Gene

Promoters and enhancers for PIR39582 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J146187 Enhancer 0.7 Ensembl dbSUPER 600.7 +1.2 1186 0.2 MAFK ZNF316 ZXDB FEZF1 ZNF843 PRDM6 EMSY PIR39582 PIR37907 NBPF10 NOTCH2NLA
GH01J146190 Enhancer 0.9 ENCODE dbSUPER 0.7 -2.6 -2551 1.6 NCOA3 CREB1 PKNOX1 CTBP1 ZFX FOXA1 BMI1 ESRRA FOXA2 TBX3 NBPF20 GPR89A POLR3C PIR39582 PIR33330 NBPF10 NOTCH2NLA
GH01J146194 Promoter/Enhancer 0.7 EPDnew dbSUPER 0.7 -4.7 -4658 0.1 PIR39582 PIR33330 NBPF10 NOTCH2NLA
GH01J146220 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.3 -32.4 -32358 2.1 NCOA3 SMARCA4 CREB1 RNF2 GATAD2B ZNF600 CTBP1 CEBPB DDX20 ZSCAN5C PIR33330 POLR3C LIX1L-AS1 NBPF10 NOTCH2NLA PIR39582
GH01J146183 Enhancer 0.9 ENCODE dbSUPER 0.4 +5.2 5225 1.3 MAFK SMARCA4 MTA1 ARID2 IKZF1 PKNOX1 HDAC1 ZNF316 CTBP1 NFE2 GPR89A POLR3C GNRHR2 PIR39582 PIR37907 NBPF10 NOTCH2NLA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR39582 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR39582 Gene

Genomic Locations for PIR39582 Gene
chr1:146,189,058-146,189,087
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand
chr1:145,249,106-145,249,135
(GRCh37/hg19)
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR39582 Gene

Genes around PIR39582 on UCSC Golden Path with GeneCards custom track

PIR39582 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR39582 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR39582 Gene

Proteins for PIR39582 Gene

Post-translational modifications for PIR39582 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR39582 Gene

Domains & Families for PIR39582 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR39582 Gene

Function for PIR39582 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR39582 Gene

Localization for PIR39582 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR39582 Gene

Pathways & Interactions for PIR39582 Gene

PathCards logo

SuperPathways for PIR39582 Gene

No Data Available

Interacting Proteins for PIR39582 Gene

Gene Ontology (GO) - Biological Process for PIR39582 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR39582 Gene

Drugs & Compounds for PIR39582 Gene

No Compound Related Data Available

Transcripts for PIR39582 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR39582 Gene

No ASD Table

Relevant External Links for PIR39582 Gene

GeneLoc Exon Structure for
PIR39582

No data available for mRNA/cDNA for PIR39582 Gene

Expression for PIR39582 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR39582 Gene

Orthologs for PIR39582 Gene

No data available for Orthologs and Evolution for PIR39582 Gene

Paralogs for PIR39582 Gene

No data available for Paralogs for PIR39582 Gene

Variants for PIR39582 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR39582 Gene

Disorders for PIR39582 Gene

No disorders were found for PIR39582 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR39582 Gene

Publications for PIR39582 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR39582 Gene

Products for PIR39582 Gene

Sources for PIR39582 Gene

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