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Aliases for PIR38678 Gene

Subcategory (RNA class) for PIR38678 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR38678 Gene

No Aliases found

ORGUL Members for PIR38678 Gene

Previous GeneCards Identifiers for PIR38678 Gene

  • GC16P000401
  • GC16P000352
  • GC16P000353
  • GC16P000373
  • GC16P000409
  • GC16P000430

No data available for External Ids for PIR38678 Gene

Summaries for PIR38678 Gene

GeneCards Summary for PIR38678 Gene

PIR38678 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR38678 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR38678 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR38678 Gene

Genomics for PIR38678 Gene

GeneHancer (GH) Regulatory Elements for PIR38678 Gene

Promoters and enhancers for PIR38678 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I000349 Enhancer 0.7 ENCODE 550.8 -1.4 -1445 0.8 HDGF PKNOX1 SAP130 ARID4B ZIC2 ATF7 NR2F6 RUNX3 SMAD5 NR2F1 PIR38678 AXIN1 GC16P000467
GH16I000351 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.8 +2.7 2734 5.8 ARID4B SIN3A DMAP1 ZBTB7B TCF12 GLIS2 ZNF143 KLF13 SP3 SP5 AXIN1 TMEM8A MRPL28 ARHGDIG NME4 HBZ PIR38678
GH16I000337 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.8 -11809 3.4 FOXA2 ARID4B DMAP1 THRB RARA GLIS2 EGR2 ZNF362 CEBPB TGIF2 TMEM8A MRPL28 ARHGDIG RHBDF1 PIR38678 AXIN1 GC16P000467
GH16I000329 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.8 -19820 2.9 SOX5 SOX13 GATAD2A KLF1 RFX1 SAP130 FOXA3 ARID4B REST RAD21 TMEM8A NHLRC4 MRPL28 ARHGDIG NME4 AXIN1 HAGHL PIR38678 GC16P000467
GH16I000323 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -24.7 -24739 5.3 PKNOX1 CLOCK ARNT NEUROD1 SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF213 LUC7L WDR90 ENSG00000228779 RHOT2 UBE2I ENSG00000261505 WDR24 JMJD8 ENSG00000262528 TMEM8A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR38678 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR38678 Gene

Genomic Locations for PIR38678 Gene
chr16:351,171-351,197
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr16:401,171-401,197
(GRCh37/hg19)

Genomic View for PIR38678 Gene

Genes around PIR38678 on UCSC Golden Path with GeneCards custom track

PIR38678 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR38678 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR38678 Gene

Proteins for PIR38678 Gene

Post-translational modifications for PIR38678 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR38678 Gene

Domains & Families for PIR38678 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR38678 Gene

Function for PIR38678 Gene

Phenotypes From GWAS Catalog for PIR38678 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR38678 Gene

Localization for PIR38678 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR38678 Gene

Pathways & Interactions for PIR38678 Gene

SuperPathways for PIR38678 Gene

No Data Available

Interacting Proteins for PIR38678 Gene

Gene Ontology (GO) - Biological Process for PIR38678 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR38678 Gene

Drugs & Compounds for PIR38678 Gene

No Compound Related Data Available

Transcripts for PIR38678 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR38678 Gene

No ASD Table

Relevant External Links for PIR38678 Gene

GeneLoc Exon Structure for
PIR38678

No data available for mRNA/cDNA for PIR38678 Gene

Expression for PIR38678 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR38678 Gene

Orthologs for PIR38678 Gene

No data available for Orthologs and Evolution for PIR38678 Gene

Paralogs for PIR38678 Gene

No data available for Paralogs for PIR38678 Gene

Variants for PIR38678 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR38678 Gene

Disorders for PIR38678 Gene

No disorders were found for PIR38678 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR38678 Gene

Publications for PIR38678 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR38678 Gene

Sources for PIR38678 Gene

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