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Aliases for PIR38554 Gene

Subcategory (RNA class) for PIR38554 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR38554 Gene

No Aliases found

Previous GeneCards Identifiers for PIR38554 Gene

  • GC02P096515
  • GC06M034624
  • GC06M035981
  • GC06M036388
  • GC06M036758
  • GC06M037109
  • GC06M037461
  • GC06M037821
  • GC06M038212

No data available for External Ids for PIR38554 Gene

Summaries for PIR38554 Gene

GeneCards Summary for PIR38554 Gene

PIR38554 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR38554 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR38554

Additional gene information for PIR38554 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR38554 Gene

Genomics for PIR38554 Gene

GeneHancer (GH) Regulatory Elements for PIR38554 Gene

Promoters and enhancers for PIR38554 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033885 Enhancer 0.6 ENCODE 650.7 -1.4 -1377 0.2 FOSL1 JUND SMARCC1 JUN SMARCC2 FOSL2 FOS EP300 GC06M038551 GC06M038589 GC06M038651 GC06M038703 GC06M038704 GC06M038705 GC06M038713 GC06M038715 GC06M038719 GC06M038724
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR38554 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR38554 Gene

Genomic Locations for PIR38554 Gene
chr6:33,883,893-33,883,932
(GRCh38/hg38)
Size:
40 bases
Orientation:
Minus strand
chr2:96,515,463-96,515,502
(GRCh37/hg19)
Size:
40 bases
Orientation:
Plus strand

Genomic View for PIR38554 Gene

Genes around PIR38554 on UCSC Golden Path with GeneCards custom track

PIR38554 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR38554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR38554 Gene

ORGUL Member Location for PIR38554 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR38554 Gene

Function for PIR38554 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR38554 Gene

Localization for PIR38554 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR38554 Gene

Pathways & Interactions for PIR38554 Gene

SuperPathways for PIR38554 Gene

No Data Available

Interacting Proteins for PIR38554 Gene

Gene Ontology (GO) - Biological Process for PIR38554 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR38554 Gene

Drugs & Compounds for PIR38554 Gene

No Compound Related Data Available

Transcripts for PIR38554 Gene

fRNAdb Secondary structures for PIR38554 Gene

  • FR116778

Alternative Splicing Database (ASD) splice patterns (SP) for PIR38554 Gene

No ASD Table

Relevant External Links for PIR38554 Gene

GeneLoc Exon Structure for
PIR38554

No data available for mRNA/cDNA for PIR38554 Gene

Expression for PIR38554 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR38554 Gene

Orthologs for PIR38554 Gene

No data available for Orthologs and Evolution for PIR38554 Gene

Paralogs for PIR38554 Gene

No data available for Paralogs for PIR38554 Gene

Variants for PIR38554 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR38554 Gene

Disorders for PIR38554 Gene

No disorders were found for PIR38554 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR38554 Gene

Publications for PIR38554 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR38554 Gene

Sources for PIR38554 Gene

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