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Aliases for PIR38533 Gene

Subcategory (RNA class) for PIR38533 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR38533 Gene

No Aliases found

ORGUL Members for PIR38533 Gene

Previous GeneCards Identifiers for PIR38533 Gene

  • GC05M092859

No data available for External Ids for PIR38533 Gene

Summaries for PIR38533 Gene

GeneCards Summary for PIR38533 Gene

PIR38533 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR38533 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR38533 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR38533 Gene

Genomics for PIR38533 Gene

GeneHancer (GH) Regulatory Elements for PIR38533 Gene

Promoters and enhancers for PIR38533 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J093576 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 -59.7 -59694 13.1 MLX FEZF1 YY1 ZNF213 ZNF416 ZNF143 ZNF548 SP3 NFYC ZFP41 NR2F1 NPM1P27 POU5F2 NR2F1-AS1 MIR2277 ENSG00000272406 FAM172A ENSG00000251023 PIR38533
GH05J093531 Enhancer 0.9 Ensembl ENCODE 0.4 -9.2 -9152 1.3 FOXA2 USF1 MAX CEBPG RAD21 YY1 HNF4G RXRA NFIA HLF PIR38533 NR2F1 NR2F1-AS1
GH05J093563 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -41.2 -41203 2.3 JUN ZNF384 BATF RELA POLR2A ATF7 FOSL2 FOS CREM RUNX3 NR2F1-AS1 MIR2277 NR2F1 PIR38533
GH05J093571 Enhancer 1.3 UCNEbase Ensembl ENCODE dbSUPER 0.2 -50.4 -50414 3.9 SUZ12 HDAC2 MAX CTBP2 PRDM1 EZH2 MIR2277 NR2F1 NR2F1-AS1 PIR38533
GH05J093503 Enhancer 0.5 ENCODE 0.4 +19.5 19522 1.4 JUND POLR2A JUNB FOS PIR38533 GC05P093476 NR2F1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR38533 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR38533 Gene

Genomic Locations for PIR38533 Gene
chr5:93,523,359-93,523,385
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr5:92,859,065-92,859,091
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR38533 Gene

Genes around PIR38533 on UCSC Golden Path with GeneCards custom track

PIR38533 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR38533 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR38533 Gene

Function for PIR38533 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR38533 Gene

Localization for PIR38533 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR38533 Gene

Pathways & Interactions for PIR38533 Gene

SuperPathways for PIR38533 Gene

No Data Available

Interacting Proteins for PIR38533 Gene

Gene Ontology (GO) - Biological Process for PIR38533 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR38533 Gene

Drugs & Compounds for PIR38533 Gene

No Compound Related Data Available

Transcripts for PIR38533 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR38533 Gene

No ASD Table

Relevant External Links for PIR38533 Gene

GeneLoc Exon Structure for
PIR38533

No data available for mRNA/cDNA for PIR38533 Gene

Expression for PIR38533 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR38533 Gene

Orthologs for PIR38533 Gene

No data available for Orthologs and Evolution for PIR38533 Gene

Paralogs for PIR38533 Gene

No data available for Paralogs for PIR38533 Gene

Variants for PIR38533 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR38533 Gene

Disorders for PIR38533 Gene

No disorders were found for PIR38533 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR38533 Gene

Publications for PIR38533 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR38533 Gene

Sources for PIR38533 Gene

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