Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR38411 Gene

Subcategory (RNA class) for PIR38411 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR38411 Gene

No Aliases found

ORGUL Members for PIR38411 Gene

Previous GeneCards Identifiers for PIR38411 Gene

  • GC20P037700

No data available for External Ids for PIR38411 Gene

Summaries for PIR38411 Gene

GeneCards Summary for PIR38411 Gene

PIR38411 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR38411 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR38411 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR38411 Gene

Genomics for PIR38411 Gene

GeneHancer (GH) Regulatory Elements for PIR38411 Gene

Promoters and enhancers for PIR38411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J039074 Enhancer 1.2 UCNEbase Ensembl 600.7 +0.9 937 9.6 ELF3 PRDM1 ZNF384 CEBPA GATAD2A RXRB RCOR2 GABPA MNT SOX13 PIR38411 FAM83D DHX35 RALGAPB LINC01734
GH20J039049 Enhancer 1.2 FANTOM5 ENCODE 0.3 -21.4 -21373 1.4 SP1 ZFX CTCF ELF3 MNT POLR2A CEBPG GTF2F1 AHR TFE3 RALGAPB ACTR5 DHX35 ENSG00000224635 SNHG17 SLC32A1 PPP1R16B PIR38411 NPM1P19
GH20J039081 Enhancer 0.9 Ensembl ENCODE 0.4 +9.8 9825 0.6 ELF3 CTCF RAD21 GATAD2A REST TRIM22 IRF2 ELF1 DEK ZBTB25 PIR38411 LINC01734
GH20J039048 Enhancer 1.1 Ensembl ENCODE 0.3 -23.4 -23375 0.6 HDGF ELF3 CTCF ZNF121 AHR RAD21 MTA1 ARID2 GATAD2A ZNF143 PIR38411 NPM1P19
GH20J039110 Enhancer 1 Ensembl ENCODE 0.3 +38.9 38925 6.4 ELF3 CTCF IKZF1 PRDM1 RAD21 RFX1 PRDM10 GATAD2A ZNF7 REST SNHG17 SNORA71A SNORA71C RALGAPB ACTR5 RPS3P2 RN7SKP173 DHX35 FAM83D PIR38411
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR38411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR38411 Gene

Genomic Locations for PIR38411 Gene
chr20:39,071,476-39,071,505
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr20:37,700,119-37,700,148
(GRCh37/hg19)
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR38411 Gene

Genes around PIR38411 on UCSC Golden Path with GeneCards custom track

PIR38411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR38411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR38411 Gene

Proteins for PIR38411 Gene

Post-translational modifications for PIR38411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR38411 Gene

Domains & Families for PIR38411 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR38411 Gene

Function for PIR38411 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR38411 Gene

Localization for PIR38411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR38411 Gene

Pathways & Interactions for PIR38411 Gene

PathCards logo

SuperPathways for PIR38411 Gene

No Data Available

Interacting Proteins for PIR38411 Gene

Gene Ontology (GO) - Biological Process for PIR38411 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR38411 Gene

Drugs & Compounds for PIR38411 Gene

No Compound Related Data Available

Transcripts for PIR38411 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR38411 Gene

No ASD Table

Relevant External Links for PIR38411 Gene

GeneLoc Exon Structure for
PIR38411

No data available for mRNA/cDNA for PIR38411 Gene

Expression for PIR38411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR38411 Gene

Orthologs for PIR38411 Gene

No data available for Orthologs and Evolution for PIR38411 Gene

Paralogs for PIR38411 Gene

No data available for Paralogs for PIR38411 Gene

Variants for PIR38411 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR38411 Gene

Disorders for PIR38411 Gene

No disorders were found for PIR38411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR38411 Gene

Publications for PIR38411 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR38411 Gene

Products for PIR38411 Gene

Sources for PIR38411 Gene

Content
Loading form....