Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR38212 Gene

Subcategory (RNA class) for PIR38212 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR38212 Gene

No Aliases found

ORGUL Members for PIR38212 Gene

Previous GeneCards Identifiers for PIR38212 Gene

  • GC22M037160

No data available for External Ids for PIR38212 Gene

Summaries for PIR38212 Gene

GeneCards Summary for PIR38212 Gene

PIR38212 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR38212 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR38212 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR38212 Gene

Genomics for PIR38212 Gene

GeneHancer (GH) Regulatory Elements for PIR38212 Gene

Promoters and enhancers for PIR38212 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I036761 Enhancer 0.3 ENCODE 550.8 +1.4 1357 1.4 USF1 PIR38212 GC22M036764 ENSG00000234979 PVALB ENSG00000229971 TEX33 NCF4 ENSG00000231467 TMPRSS6 IFT27
GH22I036763 Enhancer 0.2 ENCODE 550.8 +0.2 219 0.2 GC22M036764 PIR38212 ENSG00000234979 PVALB ENSG00000229971 TEX33 NCF4 ENSG00000231467 TMPRSS6 IFT27
GH22I036775 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.4 -12.2 -12223 1.9 PKNOX1 ATF1 SIN3A ZBTB7B BRCA1 YY1 TCF12 ZNF143 ATF7 FOS IFT27 GGA1 PVALB ENSG00000234979 ENSG00000229971 NCF4 NCF4-AS1 TEX33 IL2RB ENSG00000235237
GH22I036757 Enhancer 0.6 ENCODE 0.4 +6.2 6229 0.2 CTCF ZNF654 GLIS1 SMC3 TRIM22 ZNF143 SIN3A REST RAD21 ENSG00000234979 PVALB ENSG00000229971 TEX33 NCF4 ENSG00000231467 TMPRSS6 GC22M036764 PIR38212 PIR39680
GH22I036737 Enhancer 0.4 Ensembl ENCODE 0.3 +26.3 26310 1 LOC105373021 PIR39680 PIR38212 GC22M036764
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR38212 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR38212 Gene

Genomic Locations for PIR38212 Gene
chr22:36,763,980-36,764,011
(GRCh38/hg38)
Size:
32 bases
Orientation:
Minus strand
chr22:37,160,024-37,160,055
(GRCh37/hg19)

Genomic View for PIR38212 Gene

Genes around PIR38212 on UCSC Golden Path with GeneCards custom track

PIR38212 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR38212 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR38212 Gene

ORGUL Member Location for PIR38212 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR38212 Gene

Proteins for PIR38212 Gene

Post-translational modifications for PIR38212 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR38212 Gene

Domains & Families for PIR38212 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR38212 Gene

Function for PIR38212 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR38212 Gene

Localization for PIR38212 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR38212 Gene

Pathways & Interactions for PIR38212 Gene

SuperPathways for PIR38212 Gene

No Data Available

Interacting Proteins for PIR38212 Gene

Gene Ontology (GO) - Biological Process for PIR38212 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR38212 Gene

Drugs & Compounds for PIR38212 Gene

No Compound Related Data Available

Transcripts for PIR38212 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR38212 Gene

No ASD Table

Relevant External Links for PIR38212 Gene

GeneLoc Exon Structure for
PIR38212

No data available for mRNA/cDNA for PIR38212 Gene

Expression for PIR38212 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR38212 Gene

Orthologs for PIR38212 Gene

No data available for Orthologs and Evolution for PIR38212 Gene

Paralogs for PIR38212 Gene

No data available for Paralogs for PIR38212 Gene

Variants for PIR38212 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR38212 Gene

Disorders for PIR38212 Gene

No disorders were found for PIR38212 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR38212 Gene

Publications for PIR38212 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR38212 Gene

Sources for PIR38212 Gene

Content
Loading form....