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Aliases for PIR35554 Gene

Subcategory (RNA class) for PIR35554 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR35554 Gene

No Aliases found

ORGUL Members for PIR35554 Gene

No data available for External Ids for PIR35554 Gene

Summaries for PIR35554 Gene

GeneCards Summary for PIR35554 Gene

PIR35554 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR35554 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR35554 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR35554 Gene

Genomics for PIR35554 Gene

GeneHancer (GH) Regulatory Elements for PIR35554 Gene

Promoters and enhancers for PIR35554 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J028558 Enhancer 0.2 Ensembl 600.7 +1.3 1261 0.4 PIR35554 GC16M028560 SGF29
GH16J028553 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.7 -3.5 -3539 2 ZNF652 ZFX ELF3 SIX5 ZNF148 NKRF POLR2A MLLT1 CEBPG RERE SGF29 ENSG00000275441 SULT1A2 ATXN2L NFATC2IP SPNS1 ENSG00000260853 ENSG00000260367 NPIPB12 NPIPB10P
GH16J028561 Enhancer 0.4 Ensembl 0.7 +4.3 4261 2.8 ZNF121 IKZF1 HLF TUFM SULT1A2 SULT1A1 PIR35554 SGF29 GC16M028560
GH16J028560 Enhancer 0.3 Ensembl 0.7 +2.4 2361 0.2 ZNF26 NPIPB12 ENSG00000198106 ENSG00000260853 NPIPB11 PIR35554 SGF29 GC16M028560
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR35554 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR35554 Gene

Genomic Locations for PIR35554 Gene
chr16:28,557,740-28,557,769
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr16:28,569,061-28,569,090
(GRCh37/hg19)
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR35554 Gene

Genes around PIR35554 on UCSC Golden Path with GeneCards custom track

PIR35554 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR35554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR35554 Gene

Proteins for PIR35554 Gene

Post-translational modifications for PIR35554 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR35554 Gene

Domains & Families for PIR35554 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR35554 Gene

Function for PIR35554 Gene

Phenotypes From GWAS Catalog for PIR35554 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR35554 Gene

Localization for PIR35554 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR35554 Gene

Pathways & Interactions for PIR35554 Gene

PathCards logo

SuperPathways for PIR35554 Gene

No Data Available

Interacting Proteins for PIR35554 Gene

Gene Ontology (GO) - Biological Process for PIR35554 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR35554 Gene

Drugs & Compounds for PIR35554 Gene

No Compound Related Data Available

Transcripts for PIR35554 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR35554 Gene

No ASD Table

Relevant External Links for PIR35554 Gene

GeneLoc Exon Structure for
PIR35554

No data available for mRNA/cDNA for PIR35554 Gene

Expression for PIR35554 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR35554 Gene

Orthologs for PIR35554 Gene

No data available for Orthologs and Evolution for PIR35554 Gene

Paralogs for PIR35554 Gene

No data available for Paralogs for PIR35554 Gene

Variants for PIR35554 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR35554 Gene

Disorders for PIR35554 Gene

No disorders were found for PIR35554 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR35554 Gene

Publications for PIR35554 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR35554 Gene

Products for PIR35554 Gene

Sources for PIR35554 Gene

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