Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR34960 Gene

Subcategory (RNA class) for PIR34960 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR34960 Gene

No Aliases found

ORGUL Members for PIR34960 Gene

Previous GeneCards Identifiers for PIR34960 Gene

  • GC17M077466

No data available for External Ids for PIR34960 Gene

Summaries for PIR34960 Gene

GeneCards Summary for PIR34960 Gene

PIR34960 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR34960 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR34960 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR34960 Gene

Genomics for PIR34960 Gene

GeneHancer (GH) Regulatory Elements for PIR34960 Gene

Promoters and enhancers for PIR34960 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J079400 Enhancer 1 Ensembl ENCODE 0.2 +65.7 65669 0.9 ATF1 RB1 ARNT ZNF48 RAD21 ZEB1 SLC30A9 GATA2 SCRT2 ZNF143 GC17M079381 PIR34960 RBFOX3
GH17J079391 Enhancer 0.7 ENCODE 0.2 +75.0 75045 0.2 CTCF USF1 RB1 ZNF266 MAX SIN3A RAD21 ZNF335 SCRT2 SMC3 USP36 EIF4A3 GC17M079381 PIR34960 RBFOX3
GH17J079388 Enhancer 0.7 ENCODE 0.2 +78.4 78355 0.2 CTCF AHR RB1 ZNF2 RBPJ RAD21 SCRT2 ZNF143 SMC3 RCOR1 GC17M079381 C1QTNF1 PIR34960 RBFOX3
GH17J079393 Enhancer 0.7 ENCODE 0.2 +73.6 73565 0.2 CTCF MXI1 ATF1 RB1 KLF17 ZNF2 RAD21 RELA NFATC1 SMC3 GC17M079381 PIR34960 RBFOX3
GH17J079394 Enhancer 0.5 FANTOM5 0.2 +73.0 72962 0.2 TCF12 CTCF ATF1 NFATC1 CREB1 STAT5A RBFOX3 GC17M079381 PIR34960
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR34960 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR34960 Gene

Genomic Locations for PIR34960 Gene
chr17:79,466,993-79,467,019
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr17:77,463,075-77,463,101
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR34960 Gene

Genes around PIR34960 on UCSC Golden Path with GeneCards custom track

PIR34960 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR34960 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR34960 Gene

Function for PIR34960 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR34960 Gene

Localization for PIR34960 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR34960 Gene

Pathways & Interactions for PIR34960 Gene

SuperPathways for PIR34960 Gene

No Data Available

Interacting Proteins for PIR34960 Gene

Gene Ontology (GO) - Biological Process for PIR34960 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR34960 Gene

Drugs & Compounds for PIR34960 Gene

No Compound Related Data Available

Transcripts for PIR34960 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR34960 Gene

No ASD Table

Relevant External Links for PIR34960 Gene

GeneLoc Exon Structure for
PIR34960

No data available for mRNA/cDNA for PIR34960 Gene

Expression for PIR34960 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR34960 Gene

Orthologs for PIR34960 Gene

No data available for Orthologs and Evolution for PIR34960 Gene

Paralogs for PIR34960 Gene

No data available for Paralogs for PIR34960 Gene

Variants for PIR34960 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR34960 Gene

Disorders for PIR34960 Gene

No disorders were found for PIR34960 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR34960 Gene

Publications for PIR34960 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR34960 Gene

Sources for PIR34960 Gene

Content
Loading form....