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Aliases for PIR34942 Gene

Subcategory (RNA class) for PIR34942 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR34942 Gene

No Aliases found

ORGUL Members for PIR34942 Gene

No data available for External Ids for PIR34942 Gene

Summaries for PIR34942 Gene

GeneCards Summary for PIR34942 Gene

PIR34942 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR34942 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR34942

Additional gene information for PIR34942 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR34942 Gene

Genomics for PIR34942 Gene

GeneHancer (GH) Regulatory Elements for PIR34942 Gene

Promoters and enhancers for PIR34942 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J008103 Enhancer 0.4 dbSUPER 650.7 +0.3 335 2.7 FOXA2 HLF FOXA1 GC11M008105 PIR46603 PIR39836 PIR42417 PIR37470 PIR34942 PIR38351 RIC3 CASC23 TUB
GH11J008168 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.2 -63.3 -63347 1.5 YY1 ETS1 ZNF335 SCRT2 ZNF143 RUNX3 HCFC1 ZBTB11 MIER2 ELF1 RIC3 LOC101927936 GC11M008105 PIR34942
GH11J008161 Enhancer 0.6 ENCODE 0.2 -56.3 -56337 0.2 CEBPB EP300 RFX5 POLR2A STAT3 RCOR1 PRDM1 CHD2 TCF7L2 ENSG00000252778 LOC101927936 RIC3 PIR34942 GC11M008105
GH11J008137 Enhancer 0.3 ENCODE 0.3 -33.2 -33172 1.5 SCRT2 RIC3 LOC101927936 TUB CASC23 PIR34942 GC11M008105
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR34942 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR34942 Gene

Genomic Locations for PIR34942 Gene
chr11:8,105,422-8,105,452
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr11:8,126,969-8,126,999
(GRCh37/hg19)
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR34942 Gene

Genes around PIR34942 on UCSC Golden Path with GeneCards custom track

PIR34942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR34942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR34942 Gene

ORGUL Member Location for PIR34942 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR34942 Gene

Function for PIR34942 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR34942 Gene

Localization for PIR34942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR34942 Gene

Pathways & Interactions for PIR34942 Gene

SuperPathways for PIR34942 Gene

No Data Available

Interacting Proteins for PIR34942 Gene

Gene Ontology (GO) - Biological Process for PIR34942 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR34942 Gene

Drugs & Compounds for PIR34942 Gene

No Compound Related Data Available

Transcripts for PIR34942 Gene

fRNAdb Secondary structures for PIR34942 Gene

  • FR192438

Alternative Splicing Database (ASD) splice patterns (SP) for PIR34942 Gene

No ASD Table

Relevant External Links for PIR34942 Gene

GeneLoc Exon Structure for
PIR34942

No data available for mRNA/cDNA for PIR34942 Gene

Expression for PIR34942 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR34942 Gene

Orthologs for PIR34942 Gene

No data available for Orthologs and Evolution for PIR34942 Gene

Paralogs for PIR34942 Gene

No data available for Paralogs for PIR34942 Gene

Variants for PIR34942 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR34942 Gene

Disorders for PIR34942 Gene

No disorders were found for PIR34942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR34942 Gene

Publications for PIR34942 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR34942 Gene

Sources for PIR34942 Gene

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