Aliases for PINCR Gene

Subcategory (RNA class) for PINCR Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PINCR Gene

  • P53-Induced Noncoding RNA 2 3 5
  • PINCR 2 5 165
  • NONHSAG054322.2 91
  • HSALNG0137521 164

External Ids for PINCR Gene

Summaries for PINCR Gene

GeneCards Summary for PINCR Gene

PINCR (P53-Induced Noncoding RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PINCR include Colorectal Cancer.

Additional gene information for PINCR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PINCR Gene

Genomics for PINCR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PINCR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ043176 Promoter 0.4 EPDnew 600.7 +0.0 22 0.1 NRF1 PINCR piR-60140-027 PPP1R2C MAOA
GH0XJ043225 Enhancer 0.6 ENCODE 0.3 +48.8 48830 0.2 GATAD2A SP1 SOX13 TEAD1 HNF4A KDM1A TEAD3 HNF4G YY1 NR2F6 piR-60140-027 PINCR PPP1R2C MAOA
GH0XJ043152 Enhancer 0.3 Ensembl 0.4 -24.1 -24088 1.5 ZNF512 PINCR piR-40120-002 PPP1R2C MAOA
GH0XJ043190 Enhancer 0.2 Ensembl 0.4 +14.9 14944 0.6 PINCR piR-60140-027 PPP1R2C MAOA
GH0XJ043136 Enhancer 0.2 FANTOM5 0.3 -40.5 -40524 0.2 PINCR piR-40120-002 PPP1R2C MAOA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PINCR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PINCR Gene

Genomic Locations for PINCR Gene
chrX:43,176,957-43,226,606
(GRCh38/hg38)
Size:
49,650 bases
Orientation:
Plus strand
chrX:43,036,243-43,085,847
(GRCh37/hg19)
Size:
49,605 bases
Orientation:
Plus strand

Genomic View for PINCR Gene

Genes around PINCR on UCSC Golden Path with GeneCards custom track
PINCR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PINCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PINCR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PINCR Gene

Proteins for PINCR Gene

No data available for DME Specific Peptides for PINCR Gene

Domains & Families for PINCR Gene

Gene Families for PINCR Gene

genes like me logo Genes that share domains with PINCR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PINCR Gene

Function for PINCR Gene

Phenotypes From GWAS Catalog for PINCR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PINCR Gene

Localization for PINCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PINCR Gene

Pathways & Interactions for PINCR Gene

PathCards logo

SuperPathways for PINCR Gene

No Data Available

Gene Ontology (GO) - Biological Process for PINCR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PINCR Gene

Drugs & Compounds for PINCR Gene

No Compound Related Data Available

Transcripts for PINCR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PINCR Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000020C1DD_9606 lncRNA 2228 5

HGNC: 53590,

RefSeq: NR_110387,

Ensembl: ENST00000440955 (view in UCSC) ,

LNCipedia: PINCR:6,

NONCODE: NONHSAT136767.2,

URS00008BA66A_9606 lncRNA 758 3

LncBook: HSALNT0281965,

LNCipedia: PINCR:5,

NONCODE: NONHSAT136766.2,

URS00009ADDEE_9606 lncRNA 2228 2

LncBook: HSALNT0281978,

NONCODE: NONHSAT222662.1,

URS00009B00B0_9606 lncRNA 732 2

LNCipedia: PINCR:7,

NONCODE: NONHSAT136768.2,

URS0000EB14F1_9606 lncRNA 2273 1

LncBook: HSALNT0281957,

PINCR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PINCR Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PINCR Gene

No ASD Table

Relevant External Links for PINCR Gene

GeneLoc Exon Structure for
PINCR

Expression for PINCR Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PINCR Gene

Orthologs for PINCR Gene

Evolution for PINCR Gene

ENSEMBL:
Gene Tree for PINCR (if available)
TreeFam:
Gene Tree for PINCR (if available)

No data available for Orthologs for PINCR Gene

Paralogs for PINCR Gene

No data available for Paralogs for PINCR Gene

Variants for PINCR Gene

Additional dbSNP identifiers (rs#s) for PINCR Gene

Structural Variations from Database of Genomic Variants (DGV) for PINCR Gene

Variant ID Type Subtype PubMed ID
esv3573913 CNV loss 25503493
nsv477701 CNV novel sequence insertion 20440878
nsv517077 CNV gain 19592680

Additional Variant Information for PINCR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PINCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PINCR Gene

Disorders for PINCR Gene

MalaCards: The human disease database

(1) MalaCards diseases for PINCR Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
Search PINCR in MalaCards View complete list of genes associated with diseases

Additional Disease Information for PINCR

genes like me logo Genes that share disorders with PINCR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PINCR Gene

Publications for PINCR Gene

  1. Prosurvival long noncoding RNA PINCR regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3. (PMID: 28580901) Chaudhary R … Lal A (eLife 2017) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for PINCR Gene

Sources for PINCR Gene