Aliases for PIK3CD-AS2 Gene

Subcategory (RNA class) for PIK3CD-AS2 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for PIK3CD-AS2 Gene

  • PIK3CD Antisense RNA 2 2 3 5
  • PIK3CD-AS2 2 170
  • HSALNG0000719 169
  • NONHSAG000322 94

External Ids for PIK3CD-AS2 Gene

Summaries for PIK3CD-AS2 Gene

GeneCards Summary for PIK3CD-AS2 Gene

PIK3CD-AS2 (PIK3CD Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PIK3CD-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PIK3CD-AS2 Gene

Genomics for PIK3CD-AS2 Gene

GeneHancer (GH) Regulatory Elements for PIK3CD-AS2 Gene

Promoters and enhancers for PIK3CD-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J009685 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 771.8 +0.9 933 5 ZBTB40 RBPJ SMARCE1 RUNX1 ZNF701 ELF1 RELA L3MBTL2 RBM39 MAX PIK3CD-AS2 lnc-TMEM201-2 MIR34AHG PIK3CD
GH01J009691 Enhancer 0.3 ENCODE dbSUPER 750.6 -1.9 -1870 0.1 PIK3CD-AS2 RF00017-047 lnc-TMEM201-2 PIK3CD
GH01J008869 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +813.6 813628 11.8 ZNF785 SIN3A ZNF24 ZBTB40 SP1 CTCF SREBF1 ZBTB6 FOXA1 SMARCE1 ENO1 RERE-AS1 RERE GPR157 SPSB1 CLSTN1 PIK3CD-AS2 MIR34AHG SLC45A1 H6PD
GH01J009232 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.3 +454.7 454717 4.2 ZBTB40 CTCF LCORL FOXA1 MLX RBPJ SMARCE1 POLR2A NR2F1 NR2F6 H6PD lnc-GPR157-5 RERE GPR157 PIK3CD-AS2 MIR34AHG RERE-AS1 SLC2A5 piR-57460-005
GH01J010429 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 12.3 -741.3 -741257 2.3 GTF3C2 E2F8 ZNF24 SP1 CTCF ZBTB6 RBPJ POLR2A HDAC2 HCFC1 ENSG00000271989 CENPS CENPS-CORT NONHSAG000344.2 piR-50444-006 TARDBP EXOSC10 ENSG00000226849 PGD UBIAD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIK3CD-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIK3CD-AS2 Gene

Genomic Locations for PIK3CD-AS2 Gene
chr1:9,672,402-9,689,418
(GRCh38/hg38)
Size:
17,017 bases
Orientation:
Minus strand
chr1:9,732,484-9,747,613
(GRCh37/hg19)
Size:
15,130 bases
Orientation:
Minus strand

Genomic View for PIK3CD-AS2 Gene

Genes around PIK3CD-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PIK3CD-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIK3CD-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PIK3CD-AS2 Gene

Proteins for PIK3CD-AS2 Gene

Post-translational modifications for PIK3CD-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIK3CD-AS2 Gene

Domains & Families for PIK3CD-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PIK3CD-AS2 Gene

Function for PIK3CD-AS2 Gene

Phenotypes From GWAS Catalog for PIK3CD-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIK3CD-AS2 Gene

Localization for PIK3CD-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIK3CD-AS2 Gene

Pathways & Interactions for PIK3CD-AS2 Gene

PathCards logo

SuperPathways for PIK3CD-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PIK3CD-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIK3CD-AS2 Gene

Drugs & Compounds for PIK3CD-AS2 Gene

No Compound Related Data Available

Transcripts for PIK3CD-AS2 Gene

mRNA/cDNA for PIK3CD-AS2 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) RNACentral transcripts :
(4) NONCODE transcripts :
(13) LNCipedia transcripts :
(9) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PIK3CD-AS2 Gene

No ASD Table

Relevant External Links for PIK3CD-AS2 Gene

GeneLoc Exon Structure for
PIK3CD-AS2
ECgene alternative splicing isoforms for
PIK3CD-AS2

Expression for PIK3CD-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PIK3CD-AS2 Gene

genes like me logo Genes that share expression patterns with PIK3CD-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIK3CD-AS2 Gene

Orthologs for PIK3CD-AS2 Gene

Evolution for PIK3CD-AS2 Gene

ENSEMBL:
Gene Tree for PIK3CD-AS2 (if available)
TreeFam:
Gene Tree for PIK3CD-AS2 (if available)

No data available for Orthologs for PIK3CD-AS2 Gene

Paralogs for PIK3CD-AS2 Gene

No data available for Paralogs for PIK3CD-AS2 Gene

Variants for PIK3CD-AS2 Gene

Sequence variations from dbSNP and Humsavar for PIK3CD-AS2 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000545016 -- 9,672,691(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000641985 -- 9,681,802(-) C/T intron_variant
rs1000653546 -- 9,678,656(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000705872 -- 9,678,370(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000715249 -- 9,682,163(-) T/C intron_variant

Additional Variant Information for PIK3CD-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIK3CD-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PIK3CD-AS2 Gene

Disorders for PIK3CD-AS2 Gene

Additional Disease Information for PIK3CD-AS2

No disorders were found for PIK3CD-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PIK3CD-AS2 Gene

Publications for PIK3CD-AS2 Gene

  1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3 56

Products for PIK3CD-AS2 Gene

Sources for PIK3CD-AS2 Gene