Aliases for PIK3CD-AS2 Gene

Data sources for PIK3CD-AS2 Gene:

RNA type for PIK3CD-AS2 Gene

lncRNA

Aliases for PIK3CD-AS2 Gene

External Ids for PIK3CD-AS2 Gene

Summaries for PIK3CD-AS2 Gene

GeneCards Summary for PIK3CD-AS2 Gene

PIK3CD-AS2 (PIK3CD Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PIK3CD-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PIK3CD-AS2 Gene

Genomics for PIK3CD-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PIK3CD-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J009685 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 271.8 +0.9 933 5 ZNF207 NCOR1 ZNF600 MYC IKZF1 ZNF592 CEBPA POLR2A NFIC ZIC2 PIK3CD-AS2 HSALNG0000719 lnc-TMEM201-2 MIR34AHG PIK3CD CLSTN1
GH01J009691 Enhancer 0.3 ENCODE dbSUPER 250.7 -1.9 -1870 0.1 HSALNG0000719 PIK3CD-AS2 RF00017-044 lnc-TMEM201-2 PIK3CD CLSTN1
GH01J008870 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +814.0 814045 12.7 BCLAF1 SP1 ZNF207 NCOR1 ZNF600 MYC IKZF1 SSRP1 JUND ZNF592 ENO1 ENO1-AS1 GPR157 RERE-AS1 CLSTN1 PIK3CD-AS2 MIR34AHG SLC45A1 H6PD lnc-RERE-4
GH01J009908 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -221.4 -221420 4.2 SP1 ZNF207 NCOR1 MYC ZNF600 IKZF1 ZNF10 NFIC POLR2A ZIC2 CTNNBIP1 H6PD PIK3CD-AS2 RBP7 HSALNG0000736 ENSG00000285701 NMNAT1
GH01J009712 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.1 -26.8 -26828 8.3 MYC NCOR1 IKZF1 ZNF600 JUND ZNF592 POLR2A CEBPA ZIC2 MXD4 GPR157 H6PD PIK3CD-AS2 CLSTN1 RBP7 HSALNG0000721 MK279940 PIK3CD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIK3CD-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PIK3CD-AS2 Gene

Latest Assembly
chr1:9,672,401-9,689,418
(GRCh38/hg38)
Size:
17,018 bases
Orientation:
Minus strand

Previous Assembly
chr1:9,732,484-9,747,632
(GRCh37/hg19 by Entrez Gene)
Size:
15,149 bases
Orientation:
Minus strand

chr1:9,732,484-9,747,613
(GRCh37/hg19 by Ensembl)
Size:
15,130 bases
Orientation:
Minus strand

Genomic View for PIK3CD-AS2 Gene

Genes around PIK3CD-AS2 on UCSC Golden Path with GeneCards custom track
PIK3CD-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PIK3CD-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIK3CD-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PIK3CD-AS2 Gene

Proteins for PIK3CD-AS2 Gene

Post-translational modifications for PIK3CD-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIK3CD-AS2 Gene

Domains & Families for PIK3CD-AS2 Gene

Gene Families for PIK3CD-AS2 Gene

genes like me logo Genes that share domains with PIK3CD-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PIK3CD-AS2 Gene

Function for PIK3CD-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIK3CD-AS2 Gene

Localization for PIK3CD-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIK3CD-AS2 Gene

Pathways & Interactions for PIK3CD-AS2 Gene

PathCards logo

SuperPathways for PIK3CD-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PIK3CD-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PIK3CD-AS2 Gene

Drugs & Compounds for PIK3CD-AS2 Gene

No Compound Related Data Available

Transcripts for PIK3CD-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PIK3CD-AS2 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004F330C_9606 lncRNA 939 3

Ensembl: ENST00000415330 (view in UCSC) ,

LncBook: HSALNT0001503,

LNCipedia: PIK3CD-AS2:7,

URS00007E3AB1_9606 lncRNA 534 3

RefSeq: NR_126367,

LncBook: HSALNT0001502,

LNCipedia: PIK3CD-AS2:2,

URS00007E3AB7_9606 lncRNA 961 2

RefSeq: NR_126366,

LNCipedia: PIK3CD-AS2:4,

URS00007E3A98_9606 lncRNA 531 1

RefSeq: NR_126368,

URS00008BE1CE_9606 lncRNA 986 3

LncBook: HSALNT0001519,

LNCipedia: PIK3CD-AS2:1,

NONCODE: NONHSAT000816.2,

PIK3CD-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PIK3CD-AS2 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PIK3CD-AS2 Gene

No ASD Table

Relevant External Links for PIK3CD-AS2 Gene

GeneLoc Exon Structure for
PIK3CD-AS2

Expression for PIK3CD-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PIK3CD-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PIK3CD-AS2

genes like me logo Genes that share expression patterns with PIK3CD-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIK3CD-AS2 Gene

Orthologs for PIK3CD-AS2 Gene

Evolution for PIK3CD-AS2 Gene

ENSEMBL:
Gene Tree for PIK3CD-AS2 (if available)
TreeFam:
Gene Tree for PIK3CD-AS2 (if available)
Alliance of Genome Resources:
Additional Orthologs for PIK3CD-AS2

No data available for Orthologs for PIK3CD-AS2 Gene

Paralogs for PIK3CD-AS2 Gene

No data available for Paralogs for PIK3CD-AS2 Gene

Variants for PIK3CD-AS2 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PIK3CD-AS2 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for PIK3CD-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIK3CD-AS2
Leiden Open Variation Database (LOVD)
PIK3CD-AS2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PIK3CD-AS2 Gene

Disorders for PIK3CD-AS2 Gene

Additional Disease Information for PIK3CD-AS2

No disorders were found for PIK3CD-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PIK3CD-AS2 Gene

Publications for PIK3CD-AS2 Gene

  1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3

Products for PIK3CD-AS2 Gene

Sources for PIK3CD-AS2 Gene