Aliases for PIK3CD-AS1 Gene

Data sources for PIK3CD-AS1 Gene:

RNA type for PIK3CD-AS1 Gene

lncRNA

Aliases for PIK3CD-AS1 Gene

External Ids for PIK3CD-AS1 Gene

Previous HGNC Symbols for PIK3CD-AS1 Gene

  • C1orf200

Summaries for PIK3CD-AS1 Gene

GeneCards Summary for PIK3CD-AS1 Gene

PIK3CD-AS1 (PIK3CD Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PIK3CD-AS1 Gene

Genomics for PIK3CD-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PIK3CD-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J009651 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 250.7 +0.8 845 5.9 BCLAF1 POLR2A BCL11A CTCF SIN3A TRIM22 GABPA SIN3B EBF1 SMARCA5 PIK3CD-AS1 PIK3CD RERE CTNNBIP1 RF00017-043 HSALNG0000715 CLSTN1
GH01J009650 Promoter/Enhancer 0.7 Ensembl dbSUPER 0.7 +4.3 4285 0.2 ZBTB33 HDGF PIK3CD-AS1 HSALNG0000715 PIK3CD CLSTN1
GH01J009643 Enhancer 0.9 ENCODE dbSUPER 0.4 +9.9 9858 1.9 ZNF580 ZNF223 NFIC CEBPB ZNF639 ZEB1 MAX EP300 ZNF623 ZNF433 HSALNG0000715 piR-33270-001 ENSG00000223989 CTNNBIP1 LNCTAM34A PIK3CD-AS1 PIK3CD CLSTN1
GH01J009645 Enhancer 0.3 dbSUPER 0.4 +8.2 8190 0.9 ZMYM3 BCOR HSALNG0000715 PIK3CD-AS1 PIK3CD CLSTN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIK3CD-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PIK3CD-AS1 Gene

Latest Assembly
chr1:9,652,609-9,654,586
(GRCh38/hg38)
Size:
1,978 bases
Orientation:
Minus strand

Previous Assembly
chr1:9,712,668-9,714,644
(GRCh37/hg19 by Entrez Gene)
Size:
1,977 bases
Orientation:
Minus strand

chr1:9,712,668-9,714,644
(GRCh37/hg19 by Ensembl)
Size:
1,977 bases
Orientation:
Minus strand

Genomic View for PIK3CD-AS1 Gene

Genes around PIK3CD-AS1 on UCSC Golden Path with GeneCards custom track
PIK3CD-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PIK3CD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIK3CD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PIK3CD-AS1 Gene

Proteins for PIK3CD-AS1 Gene

  • Protein details for PIK3CD-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SR53-CA200_HUMAN
    Recommended name:
    Putative uncharacterized protein PIK3CD-AS1
    Protein Accession:
    Q5SR53
    Secondary Accessions:
    • Q8N853

    Protein attributes for PIK3CD-AS1 Gene

    Size:
    167 amino acids
    Molecular mass:
    18168 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PIK3CD-AS1 Gene

Post-translational modifications for PIK3CD-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PIK3CD-AS1 Gene

Domains & Families for PIK3CD-AS1 Gene

Gene Families for PIK3CD-AS1 Gene

genes like me logo Genes that share domains with PIK3CD-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PIK3CD-AS1 Gene

Function for PIK3CD-AS1 Gene

Phenotypes From GWAS Catalog for PIK3CD-AS1 Gene

Phenotypes for PIK3CD-AS1 Gene

genes like me logo Genes that share phenotypes with PIK3CD-AS1: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIK3CD-AS1 Gene

Localization for PIK3CD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIK3CD-AS1 Gene

Pathways & Interactions for PIK3CD-AS1 Gene

PathCards logo

SuperPathways for PIK3CD-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PIK3CD-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PIK3CD-AS1 Gene

Drugs & Compounds for PIK3CD-AS1 Gene

No Compound Related Data Available

Transcripts for PIK3CD-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PIK3CD-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007D8F0D_9606 lncRNA 1825 2

Ensembl: ENST00000377320 (view in UCSC) ,

LNCipedia: PIK3CD-AS1:1,

URS000075D430_9606 lncRNA 1823 1

RefSeq: NR_027045,

PIK3CD-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PIK3CD-AS1 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PIK3CD-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for PIK3CD-AS1 Gene

No ASD Table

Relevant External Links for PIK3CD-AS1 Gene

GeneLoc Exon Structure for
PIK3CD-AS1

Expression for PIK3CD-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PIK3CD-AS1 Gene

Protein differential expression in normal tissues from HIPED for PIK3CD-AS1 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PIK3CD-AS1 Gene



Protein tissue co-expression partners for PIK3CD-AS1 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PIK3CD-AS1

genes like me logo Genes that share expression patterns with PIK3CD-AS1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIK3CD-AS1 Gene

Orthologs for PIK3CD-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PIK3CD-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C1orf200 30
  • 96 (a)
OneToOne
Species where no ortholog for PIK3CD-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for PIK3CD-AS1 Gene

ENSEMBL:
Gene Tree for PIK3CD-AS1 (if available)
TreeFam:
Gene Tree for PIK3CD-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PIK3CD-AS1

Paralogs for PIK3CD-AS1 Gene

No data available for Paralogs for PIK3CD-AS1 Gene

Variants for PIK3CD-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PIK3CD-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
982099 Benign: not specified 9,654,484(-) G/C
NM_005026.5(PIK3CD):c.-138+2682G>C
NON_CODING_TRANSCRIPT_VARIANT,INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PIK3CD-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PIK3CD-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv508847 CNV insertion 20534489

Variation tolerance for PIK3CD-AS1 Gene

Gene Damage Index Score: 1.80; 33.99% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PIK3CD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIK3CD-AS1
Leiden Open Variation Database (LOVD)
PIK3CD-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PIK3CD-AS1 Gene

Disorders for PIK3CD-AS1 Gene

Additional Disease Information for PIK3CD-AS1

No disorders were found for PIK3CD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PIK3CD-AS1 Gene

Publications for PIK3CD-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for PIK3CD-AS1 Gene

Sources for PIK3CD-AS1 Gene