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Aliases for PIK3CD-AS1 Gene

Subcategory (RNA class) for PIK3CD-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PIK3CD-AS1 Gene

  • PIK3CD Antisense RNA 1 2 3 4 5
  • C1orf200 3 4
  • Chromosome 1 Open Reading Frame 200 2
  • PIK3CD Antisense Gene Protein 1 4

External Ids for PIK3CD-AS1 Gene

Previous HGNC Symbols for PIK3CD-AS1 Gene

  • C1orf200

Summaries for PIK3CD-AS1 Gene

GeneCards Summary for PIK3CD-AS1 Gene

PIK3CD-AS1 (PIK3CD Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PIK3CD-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PIK3CD-AS1 Gene

Genomics for PIK3CD-AS1 Gene

GeneHancer (GH) Regulatory Elements for PIK3CD-AS1 Gene

Promoters and enhancers for PIK3CD-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I009651 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.6 635 5.5 HDGF PKNOX1 RB1 YBX1 BATF ZNF335 EGR1 SCRT2 ETV6 BCLAF1 PIK3CD-AS1 PIK3CD CTNNBIP1
GH01I009657 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 -3.3 -3346 1.8 HDAC1 HDGF PKNOX1 ATF1 ARNT NFRKB FEZF1 NFXL1 BATF TCF12 CTNNBIP1 PIK3CD-AS1 RPL26P7 PIK3CD
GH01I009660 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.8 -4.8 -4815 0.4 ZNF157 CEBPA CEBPB CEBPG CLSTN1 CTNNBIP1 PIK3CD-AS1 RPL26P7 PIK3CD
GH01I009643 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +9.9 9938 2.1 ZFP64 MZF1 ZEB1 ZNF121 ZNF213 ZNF354C EGR1 EGR2 ZNF202 ZNF680 ENSG00000223989 CTNNBIP1 LINC01759 PIK3CD-AS1 PIK3CD
GH01I009662 Enhancer 0.5 ENCODE dbSUPER 0.8 -4.5 -4508 0.1 ZNF157 CLSTN1 CTNNBIP1 PIK3CD-AS1 RPL26P7 PIK3CD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIK3CD-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIK3CD-AS1 Gene

Genomic Locations for PIK3CD-AS1 Gene
chr1:9,652,610-9,654,586
(GRCh38/hg38)
Size:
1,977 bases
Orientation:
Minus strand
chr1:9,712,668-9,714,644
(GRCh37/hg19)

Genomic View for PIK3CD-AS1 Gene

Genes around PIK3CD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PIK3CD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIK3CD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PIK3CD-AS1 Gene

Proteins for PIK3CD-AS1 Gene

  • Protein details for PIK3CD-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SR53-CA200_HUMAN
    Recommended name:
    Putative uncharacterized protein PIK3CD-AS1
    Protein Accession:
    Q5SR53
    Secondary Accessions:
    • Q8N853

    Protein attributes for PIK3CD-AS1 Gene

    Size:
    167 amino acids
    Molecular mass:
    18168 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PIK3CD-AS1 Gene

Post-translational modifications for PIK3CD-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIK3CD-AS1 Gene

Domains & Families for PIK3CD-AS1 Gene

Protein Domains for PIK3CD-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PIK3CD-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIK3CD-AS1 Gene

Function for PIK3CD-AS1 Gene

Phenotypes From GWAS Catalog for PIK3CD-AS1 Gene

Phenotypes for PIK3CD-AS1 Gene

GenomeRNAi human phenotypes for PIK3CD-AS1:
genes like me logo Genes that share phenotypes with PIK3CD-AS1: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIK3CD-AS1 Gene

Localization for PIK3CD-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PIK3CD-AS1 gene
Compartment Confidence
extracellular 2
nucleus 1
cytosol 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIK3CD-AS1 Gene

Pathways & Interactions for PIK3CD-AS1 Gene

SuperPathways for PIK3CD-AS1 Gene

No Data Available

Interacting Proteins for PIK3CD-AS1 Gene

Gene Ontology (GO) - Biological Process for PIK3CD-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIK3CD-AS1 Gene

Drugs & Compounds for PIK3CD-AS1 Gene

No Compound Related Data Available

Transcripts for PIK3CD-AS1 Gene

mRNA/cDNA for PIK3CD-AS1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for PIK3CD-AS1 Gene

No ASD Table

Relevant External Links for PIK3CD-AS1 Gene

GeneLoc Exon Structure for
PIK3CD-AS1
ECgene alternative splicing isoforms for
PIK3CD-AS1

Expression for PIK3CD-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PIK3CD-AS1 Gene

Protein differential expression in normal tissues from HIPED for PIK3CD-AS1 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PIK3CD-AS1 Gene



Protein tissue co-expression partners for PIK3CD-AS1 Gene

- Elite partner
genes like me logo Genes that share expression patterns with PIK3CD-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIK3CD-AS1 Gene

Orthologs for PIK3CD-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PIK3CD-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1orf200 34
  • 96 (a)
OneToOne
Species where no ortholog for PIK3CD-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PIK3CD-AS1 Gene

ENSEMBL:
Gene Tree for PIK3CD-AS1 (if available)
TreeFam:
Gene Tree for PIK3CD-AS1 (if available)

Paralogs for PIK3CD-AS1 Gene

No data available for Paralogs for PIK3CD-AS1 Gene

Variants for PIK3CD-AS1 Gene

Sequence variations from dbSNP and Humsavar for PIK3CD-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001075479 -- 9,655,181(-) T/C upstream_transcript_variant
rs1001101408 -- 9,654,763(-) C/A upstream_transcript_variant
rs1001441756 -- 9,652,655(-) C/T non_coding_transcript_variant
rs1002649600 -- 9,654,383(-) A/C non_coding_transcript_variant
rs1003033467 -- 9,655,390(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PIK3CD-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv508847 CNV insertion 20534489

Variation tolerance for PIK3CD-AS1 Gene

Gene Damage Index Score: 1.80; 33.99% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PIK3CD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIK3CD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PIK3CD-AS1 Gene

Disorders for PIK3CD-AS1 Gene

Additional Disease Information for PIK3CD-AS1

No disorders were found for PIK3CD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PIK3CD-AS1 Gene

Publications for PIK3CD-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for PIK3CD-AS1 Gene

Sources for PIK3CD-AS1 Gene

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