Aliases for PIK3C3 Gene

Aliases for PIK3C3 Gene

  • Phosphatidylinositol 3-Kinase Catalytic Subunit Type 3 2 3 4 5
  • Phosphatidylinositol 3-Kinase P100 Subunit 3 4
  • Phosphoinositide-3-Kinase, Class 3 2 3
  • PtdIns-3-Kinase Type 3 3 4
  • PI3-Kinase Type 3 3 4
  • EC 2.7.1.137 4 50
  • PI3K Type 3 3 4
  • HVps34 3 4
  • VPS34 3 4
  • Vps34 2 3
  • Phosphatidylinositol 3-Kinase, Catalytic Subunit Type 3 2
  • Phosphoinositide-3-Kinase Class 3 4
  • EC 2.7.1 50
  • PIK3C3 5

External Ids for PIK3C3 Gene

Previous GeneCards Identifiers for PIK3C3 Gene

  • GC18P039741
  • GC18P039321
  • GC18P039423
  • GC18P037787
  • GC18P037789
  • GC18P039535
  • GC18P036394

Summaries for PIK3C3 Gene

GeneCards Summary for PIK3C3 Gene

PIK3C3 (Phosphatidylinositol 3-Kinase Catalytic Subunit Type 3) is a Protein Coding gene. Diseases associated with PIK3C3 include Kaposi Sarcoma and Myopathy, X-Linked, With Excessive Autophagy. Among its related pathways are Apelin signaling pathway and Pathways of neurodegeneration - multiple diseases. Gene Ontology (GO) annotations related to this gene include transferase activity, transferring phosphorus-containing groups and binding. An important paralog of this gene is PIK3CG.

UniProtKB/Swiss-Prot Summary for PIK3C3 Gene

  • Catalytic subunit of the PI3K complex that mediates formation of phosphatidylinositol 3-phosphate; different complex forms are believed to play a role in multiple membrane trafficking pathways: PI3KC3-C1 is involved in initiation of autophagosomes and PI3KC3-C2 in maturation of autophagosomes and endocytosis. Involved in regulation of degradative endocytic trafficking and required for the abcission step in cytokinesis, probably in the context of PI3KC3-C2 (PubMed:20643123, PubMed:20208530). Involved in the transport of lysosomal enzyme precursors to lysosomes. Required for transport from early to late endosomes (By similarity).

Tocris Summary for PIK3C3 Gene

  • PI 3-Kinases (phosphoinositide 3-kinases, PI 3-Ks) are a family of lipid kinases capable of phosphorylating the 3'OH of the inositol ring of phosphoinositides. They are responsible for coordinating a diverse range of cell functions including proliferation and survival.

Gene Wiki entry for PIK3C3 Gene

No data available for Entrez Gene Summary , CIViC Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PIK3C3 Gene

Genomics for PIK3C3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PIK3C3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J041954 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 257.9 +0.5 493 2.6 MYC SIX5 POLR2A NFIC YY1 SMAD5 SIN3A ELK1 ETS1 MBD2 PIK3C3 HSALNG0121156
GH18J041991 Enhancer 1 Ensembl ENCODE 12.1 +37.4 37375 1.6 BCL11A TRIM22 IRF4 CBFB BHLHE40 SPI1 BATF ELF1 ZNF24 STAT5A PIK3C3 HSALNG0121156 HSALNG0121157
GH18J042113 Enhancer 0.8 ENCODE 10.5 +158.9 158913 1.9 ZNF654 CEBPA YY1 REST CEBPB TRIM22 CTCF THAP11 SMAD4 RAD21 ENSG00000287007 PIK3C3 HSALNG0121166
GH18J041937 Enhancer 1 FANTOM5 Ensembl ENCODE 6.5 -16.3 -16268 5.5 JUND CTCF RAD21 MAFK IKZF1 HDGF BHLHE40 MEIS2 MCM2 PHF20 PIK3C3 LOC105372085
GH18J041974 Enhancer 0.4 Ensembl 12.6 +19.7 19675 0.6 IKZF1 IKZF2 MTA2 PIK3C3 HSALNG0121156 HSALNG0121157
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIK3C3 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for PIK3C3

Top Transcription factor binding sites by QIAGEN in the PIK3C3 gene promoter:
  • ATF6
  • Bach1
  • Evi-1
  • GATA-6
  • Gfi-1
  • HNF-1
  • HNF-1A
  • Ik-1
  • p53
  • Sox9

Genomic Locations for PIK3C3 Gene

Latest Assembly
chr18:41,955,226-42,087,830
(GRCh38/hg38)
Size:
132,605 bases
Orientation:
Plus strand

Previous Assembly
chr18:39,535,199-39,667,794
(GRCh37/hg19 by Entrez Gene)
Size:
132,596 bases
Orientation:
Plus strand

chr18:39,535,171-39,667,794
(GRCh37/hg19 by Ensembl)
Size:
132,624 bases
Orientation:
Plus strand

Genomic View for PIK3C3 Gene

Genes around PIK3C3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PIK3C3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIK3C3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PIK3C3 Gene

Proteins for PIK3C3 Gene

  • Protein details for PIK3C3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NEB9-PK3C3_HUMAN
    Recommended name:
    Phosphatidylinositol 3-kinase catalytic subunit type 3
    Protein Accession:
    Q8NEB9
    Secondary Accessions:
    • Q15134

    Protein attributes for PIK3C3 Gene

    Size:
    887 amino acids
    Molecular mass:
    101549 Da
    Cofactor:
    Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
    Quaternary structure:
    • Component of the PI3K (PI3KC3/PI3K-III/class III phosphatidylinositol 3-kinase) complex the core of which is composed of the catalytic subunit PIK3C3, the regulatory subunit PIK3R4 and BECN1 associating with additional regulatory/auxilliary subunits to form alternative complex forms. Alternative complex forms containing a forth regulatory subunit in a mutually exclusive manner are: the PI3K complex I (PI3KC3-C1) containing ATG14, and the PI3K complex II (PI3KC3-C2) containing UVRAG. PI3KC3-C1 displays a V-shaped architecture with PIK3R4 serving as a bridge between PIK3C3 and the ATG14:BECN1 subcomplex. Both, PI3KC3-C1 and PI3KC3-C2, can associate with further regulatory subunits such as RUBCN, SH3GLB1/Bif-1 and AMBRA1 (PubMed:7628435, PubMed:19050071, PubMed:20643123, PubMed:19270696, PubMed:23878393, PubMed:25490155). PI3KC3-C1 probably associates with PIK3CB (By similarity). Interacts with RAB7A in the presence of PIK3R4 (PubMed:14617358). Interacts with AMBRA1 (By similarity). Interacts with BECN1P1/BECN2 (PubMed:23954414). Interacts with SLAMF1(PubMed:22493499). May be a component of a complex composed of RAB5A (in GDP-bound form), DYN2 and PIK3C3 (By similarity). Interacts with NCKAP1L (PubMed:16417406). Interacts with ATG14; this interaction is increased in the absence of TMEM39A (PubMed:31806350).

    Three dimensional structures from OCA and Proteopedia for PIK3C3 Gene

neXtProt entry for PIK3C3 Gene

Selected DME Specific Peptides for PIK3C3 Gene

Q8NEB9:
  • SNLILNLF
  • LTPYKVLAT
  • FKTEDGGKYPVIFK
  • LEQDLCTFLISRACKNSTLANYLYWYVIVECE
  • FSTRWNWNEWLKLPVKYPDLPRNAQVALTIWDVYGPG
  • KEMVEGMGG
  • RDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLA
  • ALFAAVVEQIHKFAQYWR
  • YSCDLDI
  • LFHIDFG
  • IPLPLEPQVKIRGIIPE
  • TEGSIQNFFRKY
  • QADDEDLLMYLLQLVQALKYENF
  • KEYGIVYYEKDGDES
  • SCAGYCV
  • ATLFKSALMPA
  • QEAKQALEL
  • FRYYLTN
  • VDWLDRLTF
  • GKLFHIDFGYILG
  • QQTFVDRLVHLMKAVQRESGNRKKKNERLQALLGDNEKM
  • TVSLFGKYGMFRQGMHDLKVWPN
  • GDDLRQDQL
  • VPDPQMSMENLVE
  • VITYILG

Post-translational modifications for PIK3C3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Domains & Families for PIK3C3 Gene

Protein Domains for PIK3C3 Gene

Suggested Antigen Peptide Sequences for PIK3C3 Gene

GenScript: Design optimal peptide antigens:
  • hVps34 (PK3C3_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8NEB9

UniProtKB/Swiss-Prot:

PK3C3_HUMAN :
  • Belongs to the PI3/PI4-kinase family.
Family:
  • Belongs to the PI3/PI4-kinase family.
genes like me logo Genes that share domains with PIK3C3: view

Function for PIK3C3 Gene

Molecular function for PIK3C3 Gene

UniProtKB/Swiss-Prot Function:
Catalytic subunit of the PI3K complex that mediates formation of phosphatidylinositol 3-phosphate; different complex forms are believed to play a role in multiple membrane trafficking pathways: PI3KC3-C1 is involved in initiation of autophagosomes and PI3KC3-C2 in maturation of autophagosomes and endocytosis. Involved in regulation of degradative endocytic trafficking and required for the abcission step in cytokinesis, probably in the context of PI3KC3-C2 (PubMed:20643123, PubMed:20208530). Involved in the transport of lysosomal enzyme precursors to lysosomes. Required for transport from early to late endosomes (By similarity).
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol) + ATP = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3-phosphate) + ADP + H(+); Xref=Rhea:RHEA:12709, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, ChEBI:CHEBI:57880, ChEBI:CHEBI:58088, ChEBI:CHEBI:456216; EC=2.7.1.137; Evidence={ECO:0000269|PubMed:7628435};.

Enzyme Numbers (IUBMB) for PIK3C3 Gene

Phenotypes From GWAS Catalog for PIK3C3 Gene

Gene Ontology (GO) - Molecular Function for PIK3C3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0004672 protein kinase activity IEA --
GO:0005515 protein binding IPI 7504174
GO:0005524 ATP binding IEA --
GO:0016301 kinase activity IEA,IDA 25327288
genes like me logo Genes that share ontologies with PIK3C3: view
genes like me logo Genes that share phenotypes with PIK3C3: view

Animal Models for PIK3C3 Gene

MGI Knock Outs for PIK3C3:

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PIK3C3

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PIK3C3 Gene

Localization for PIK3C3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PIK3C3 Gene

Midbody. Late endosome. Cytoplasmic vesicle, autophagosome. Note=As component of the PI3K complex I localized to pre-autophagosome structures. As component of the PI3K complex II localized predominantly to endosomes (Probable). Localizes also to discrete punctae along the ciliary axoneme and to the base of the ciliary axoneme (By similarity). {ECO:0000250 UniProtKB:Q6PF93, ECO:0000305 PubMed:14617358}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PIK3C3 gene
Compartment Confidence
cytoskeleton 5
endosome 5
cytosol 5
lysosome 5
peroxisome 4
mitochondrion 3
nucleus 3
endoplasmic reticulum 3
plasma membrane 2
extracellular 2
golgi apparatus 2

Gene Ontology (GO) - Cellular Components for PIK3C3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000407 phagophore assembly site IBA 21873635
GO:0005737 cytoplasm IBA 21873635
GO:0005768 endosome IBA 21873635
GO:0005770 late endosome IEA,IDA 14617358
GO:0005776 autophagosome IEA --
genes like me logo Genes that share ontologies with PIK3C3: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for PIK3C3 Gene

Pathways & Interactions for PIK3C3 Gene

genes like me logo Genes that share pathways with PIK3C3: view

Pathways by source for PIK3C3 Gene

2 Sino Biological pathways for PIK3C3 Gene
4 GeneGo (Thomson Reuters) pathways for PIK3C3 Gene
  • Delta508-CFTR traffic / Sorting endosome formation in CF
  • Normal wtCFTR traffic / Sorting endosome formation
  • Transport Clathrin-coated vesicle cycle
  • wtCFTR and deltaF508 traffic / Late endosome and Lysosome (norm and CF)
3 Qiagen pathways for PIK3C3 Gene
  • CD28 Signaling in T-Helper Cell
  • ICos-ICosL Pathway in T-Helper Cell
  • PI3K Signaling in B-Lymphocyte
3 Cell Signaling Technology pathways for PIK3C3 Gene
2 GeneTex pathways for PIK3C3 Gene

SIGNOR curated interactions for PIK3C3 Gene

Activates:
Is activated by:
Is inactivated by:

Gene Ontology (GO) - Biological Process for PIK3C3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000045 autophagosome assembly IEA,IBA 21873635
GO:0006468 protein phosphorylation IEA --
GO:0006497 protein lipidation IMP 25327288
GO:0006661 phosphatidylinositol biosynthetic process TAS --
GO:0006897 endocytosis IBA 21873635
genes like me logo Genes that share ontologies with PIK3C3: view

Drugs & Compounds for PIK3C3 Gene

(26) Drugs for PIK3C3 Gene - From: DrugBank, ApexBio, DGIdb, HMDB, Tocris, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Manganese Approved Nutra 65
3-Methyladenine Experimental Pharma Class III PI3K inhibitor, Class III PI 3-kinase inhibitor; also inhibits autophagy 0
N-(5-{4-Chloro-3-[(2-hydroxyethyl)sulfamoyl]phenyl}-4-methyl-1,3-thiazol-2-yl)acetamide Experimental Pharma Target 0
Quercetin Experimental, Investigational Pharma Antitumor agent, Non-selective PI 3-kinase inhibitor 68
Wortmannin Experimental Pharma PI3K inhibitor,selective and irreversible, Potent, irreversible inhibitor of PI 3-kinase. Also inhibitor of PLK1 0

(386) Additional Compounds for PIK3C3 Gene - From: HMDB, Novoseek, and Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • 5'-Adenylphosphoric acid
  • Adenosine 5'-diphosphate
  • ADENOSINE-5'-diphosphATE
  • H3ADP
  • 5'-Adenylphosphate
58-64-0
D-myo-Inositol 1,3-bisphosphate
  • D-Myo-inositol 1,3-bisphosphate
  • Inositol 1,3-bisphosphate
  • PHOSPHORIC ACID mono-(2,3,4,6-tetrahydroxy-5-phosphonooxy-cyclohexyl) ester
  • Myo-inositol 1,3-bisphosphate
  • D-Myo-inositol 1,3-bisphosphoric acid
103597-56-4
Phosphatidylinositol-3,4,5-trisphosphate
  • Phosphatidylinositol-3,4,5-trisphosphoric acid
  • 1,2-Diacyl-sn-glycero-3-phospho-(1'-myo-inositol-3',4',5'-bisphosphate)
  • 1-Phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate
PI(16:0/16:0)
  • 1,2-Dihexadecanoyl-rac-glycero-3-phospho-(1'-myo-inositol)
  • 1,2-Dipalmitoyl-rac-glycero-3-phosphoinositol
  • Phosphatidylinositol(16:0/16:0)
  • Phosphatidylinositol(32:0)
  • PI(32:0)
PI(16:0/16:1(9Z))
  • 1-Hexadecanoyl-2-(9Z-hexadecenoyl)-sn-glycero-3-phospho-(1'-myo-inositol)
  • 1-Palmitoyl-2-palmitoleoyl-sn-glycero-3-phosphoinositol
  • Phosphatidylinositol(16:0/16:1)
  • Phosphatidylinositol(16:0/16:1n7)
  • Phosphatidylinositol(16:0/16:1W7)

(5) Tocris Compounds for PIK3C3 Gene

Compound Action Cas Number
3-Methyladenine Class III PI 3-kinase inhibitor; also inhibits autophagy 5142-23-4
LY 294002 hydrochloride Prototypical PI 3-kinase inhibitor; also inhibits other kinases 934389-88-5
PI 103 hydrochloride Inhibitor of PI 3-kinase, mTOR and DNA-PK 371935-79-4
Quercetin Non-selective PI 3-kinase inhibitor 117-39-5
Wortmannin Potent, irreversible inhibitor of PI 3-kinase. Also inhibitor of PLK1 19545-26-7

(2) ApexBio Compounds for PIK3C3 Gene

Compound Action Cas Number
3-Methyladenine Class III PI3K inhibitor 5142-23-4
SAR405 Selective ATP-competitive inhibitor of Vps34 1523406-39-4
genes like me logo Genes that share compounds with PIK3C3: view

Drug products for research

Transcripts for PIK3C3 Gene

mRNA/cDNA for PIK3C3 Gene

2 REFSEQ mRNAs :
13 NCBI additional mRNA sequence :
17 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PIK3C3

Alternative Splicing Database (ASD) splice patterns (SP) for PIK3C3 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^ 18a · 18b ^
SP1: - - - - - -
SP2:
SP3: -
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

ExUns: 19 ^ 20 ^ 21 ^ 22a · 22b · 22c ^ 23a · 23b · 23c ^ 24 ^ 25 ^ 26 ^ 27a · 27b · 27c · 27d · 27e
SP1: - - - - -
SP2: - - - - -
SP3:
SP4: -
SP5: - - - -
SP6:
SP7: -
SP8: - - - - -
SP9:
SP10: - - - - - - - -
SP11:

Relevant External Links for PIK3C3 Gene

GeneLoc Exon Structure for
PIK3C3

Expression for PIK3C3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PIK3C3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for PIK3C3 Gene

This gene is overexpressed in Lymph node (17.8) and Peripheral blood mononuclear cells (9.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for PIK3C3 Gene



Protein tissue co-expression partners for PIK3C3 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PIK3C3

SOURCE GeneReport for Unigene cluster for PIK3C3 Gene:

Hs.464971

mRNA Expression by UniProt/SwissProt for PIK3C3 Gene:

Q8NEB9-PK3C3_HUMAN
Tissue specificity: Ubiquitously expressed, with a highest expression in skeletal muscle.

Evidence on tissue expression from TISSUES for PIK3C3 Gene

  • Nervous system(3.2)
  • Lung(3)
  • Liver(2.9)
  • Kidney(2.9)
  • Muscle(2.9)
  • Heart(2.9)
  • Spleen(2.8)
  • Skin(2.6)
  • Intestine(2.6)
  • Blood(2.6)
  • Lymph node(2.5)
  • Adrenal gland(2.3)
  • Pancreas(2.3)
  • Bone marrow(2.2)
  • Eye(2.1)
  • Thyroid gland(2.1)
  • Stomach(2.1)
genes like me logo Genes that share expression patterns with PIK3C3: view

Primer products for research

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIK3C3 Gene

Orthologs for PIK3C3 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PIK3C3 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia PIK3C3 29 30
  • 99.66 (n)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia PIK3C3 30
  • 98 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia PIK3C3 29 30
  • 93.76 (n)
OneToOne
Cow
(Bos Taurus)
Mammalia PIK3C3 29 30
  • 92.71 (n)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia PIK3C3 30
  • 91 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Pik3c3 29 16 30
  • 87.75 (n)
OneToOne
Rat
(Rattus norvegicus)
Mammalia Pik3c3 29
  • 87 (n)
Chicken
(Gallus gallus)
Aves PIK3C3 29 30
  • 82.39 (n)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia PIK3C3 30
  • 95 (a)
OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia pik3c3 29
  • 77.31 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.11237 29
Zebrafish
(Danio rerio)
Actinopterygii pik3c3 29 30
  • 73.63 (n)
OneToOne
wufc13g06 29
Fruit Fly
(Drosophila melanogaster)
Insecta Pi3K59F 29 30 31
  • 58.99 (n)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010273 29
  • 41.33 (n)
Worm
(Caenorhabditis elegans)
Secernentea vps-34 29 30 31
  • 50.83 (n)
OneToOne
Baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes VPS34 29 30 32
  • 48.13 (n)
OneToMany
K. Lactis Yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D18645g 29
  • 47.98 (n)
A. gosspyii yeast
(Eremothecium gossypii)
Saccharomycetes AGOS_AGL113C 29
  • 47.72 (n)
Thale Cress
(Arabidopsis thaliana)
eudicotyledons VPS34 29
  • 53.23 (n)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.9995 29
Soybean
(Glycine max)
eudicotyledons Gma.2544 29
Rice
(Oryza sativa)
Liliopsida Os05g0180600 29
  • 51.98 (n)
Os.11111 29
Barley
(Hordeum vulgare)
Liliopsida Hv.11305 29
Wheat
(Triticum aestivum)
Liliopsida Ta.28795 29
Sea Squirt
(Ciona savignyi)
Ascidiacea CSA.3927 30
  • 59 (a)
OneToOne
Fission Yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes pik3 29
  • 53.36 (n)
Bread mold
(Neurospora crassa)
Ascomycetes NCU00656 29
  • 48.62 (n)
Sea Vase
(Ciona intestinalis)
Ascidiacea Cin.5903 29
Species where no ortholog for PIK3C3 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for PIK3C3 Gene

ENSEMBL:
Gene Tree for PIK3C3 (if available)
TreeFam:
Gene Tree for PIK3C3 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for PIK3C3: view image
Alliance of Genome Resources:
Additional Orthologs for PIK3C3

Paralogs for PIK3C3 Gene

Paralogs for PIK3C3 Gene

(5) SIMAP similar genes for PIK3C3 Gene using alignment to 13 proteins:

  • PK3C3_HUMAN
  • A8MYT4_HUMAN
  • K7EIV6_HUMAN
  • K7EKH3_HUMAN
  • K7ENH3_HUMAN
  • M0QXS9_HUMAN
  • M0QZG0_HUMAN
  • M0R0G8_HUMAN
  • M0R0U1_HUMAN
  • M0R0W7_HUMAN
  • M0R2C5_HUMAN
  • M0R308_HUMAN
  • M0R386_HUMAN
genes like me logo Genes that share paralogs with PIK3C3: view

Variants for PIK3C3 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PIK3C3 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
rs115685722 Benign: not provided 42,067,450(+) G/A
NM_002647.4(PIK3C3):c.2586G>A (p.Leu862=)
SYNONYMOUS
rs141681761 Likely Benign: not provided 42,043,805(+) G/A
NM_002647.4(PIK3C3):c.2176G>A (p.Val726Ile)
MISSENSE
rs16975526 Benign: not provided 42,004,523(+) G/A
NM_002647.4(PIK3C3):c.1152G>A (p.Leu384=)
SYNONYMOUS
rs200438334 Benign: not provided 42,004,549(+) ATTAT/A
NM_002647.4(PIK3C3):c.1170+14_1170+17del
INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PIK3C3 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PIK3C3 Gene

Variant ID Type Subtype PubMed ID
dgv3342n100 CNV gain 25217958
dgv982e212 CNV gain 25503493
esv1001271 CNV insertion 20482838
esv1518239 CNV deletion 17803354
esv2316444 CNV deletion 18987734
esv2674644 CNV deletion 23128226
esv2717009 CNV deletion 23290073
esv2717010 CNV deletion 23290073
esv2717011 CNV deletion 23290073
esv2717012 CNV deletion 23290073
esv2762006 CNV gain 21179565
esv34153 CNV loss 18971310
esv3555276 CNV deletion 23714750
esv3642321 CNV gain 21293372
esv3642341 CNV loss 21293372
esv3642342 CNV gain 21293372
esv3642345 CNV gain 21293372
esv3642346 CNV loss 21293372
esv3642347 CNV gain 21293372
esv3893097 CNV gain 25118596
nsv131226 CNV deletion 16902084
nsv507870 OTHER sequence alteration 20534489
nsv833631 CNV loss 17160897

Variation tolerance for PIK3C3 Gene

Residual Variation Intolerance Score: 2.75% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.52; 29.52% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PIK3C3 Gene

Human Gene Mutation Database (HGMD)
PIK3C3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIK3C3
Leiden Open Variation Database (LOVD)
PIK3C3

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PIK3C3 Gene

Disorders for PIK3C3 Gene

MalaCards: The human disease database

(10) MalaCards diseases for PIK3C3 Gene - From: COP and GCD

Disorder Aliases PubMed IDs
kaposi sarcoma
  • kaposi sarcoma, susceptibility to
myopathy, x-linked, with excessive autophagy
  • meax
danon disease
  • vacuolar cardiomyopathy and myopathy, x-linked
alzheimer disease
  • ad
myopathy, centronuclear, x-linked
  • cnmx
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PIK3C3

Human Genome Epidemiology Navigator
(HuGE)
Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with PIK3C3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PIK3C3 Gene

Publications for PIK3C3 Gene

  1. PtdIns(3)P controls cytokinesis through KIF13A-mediated recruitment of FYVE-CENT to the midbody. (PMID: 20208530) Sagona AP … Stenmark H (Nature cell biology 2010) 3 4 22
  2. Human VPS34 and p150 are Rab7 interacting partners. (PMID: 14617358) Stein MP … Wandinger-Ness A (Traffic (Copenhagen, Denmark) 2003) 3 4 22
  3. A human phosphatidylinositol 3-kinase complex related to the yeast Vps34p-Vps15p protein sorting system. (PMID: 7628435) Volinia S … Waterfield MD (The EMBO journal 1995) 2 3 4
  4. The ER-Localized Transmembrane Protein TMEM39A/SUSR2 Regulates Autophagy by Controlling the Trafficking of the PtdIns(4)P Phosphatase SAC1. (PMID: 31806350) Miao G … Zhang H (Molecular cell 2020) 3 4
  5. Architecture and dynamics of the autophagic phosphatidylinositol 3-kinase complex. (PMID: 25490155) Baskaran S … Hurley JH (eLife 2014) 3 4

Products for PIK3C3 Gene

Sources for PIK3C3 Gene