PIGY-DT Gene (RNA Gene)

PIGY Divergent Transcript

GC04P088526
GIFtS:
6
See more...

Aliases for PIGY-DT Gene

Subcategory (RNA class) for PIGY-DT Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for PIGY-DT Gene

  • PIGY Divergent Transcript 2 3 5
  • NONHSAG038405.2 91
  • Lnc-HERC5-1 165
  • PIGY-DT 5

External Ids for PIGY-DT Gene

Summaries for PIGY-DT Gene

GeneCards Summary for PIGY-DT Gene

PIGY-DT (PIGY Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PIGY-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PIGY-DT Gene

Genomics for PIGY-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PIGY-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J088522 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.5 -531 3 SP1 GATAD2A HNRNPL TFE3 IKZF1 NFKBIZ ZNF692 POLR2A ZNF7 BACH1 ENSG00000287542 HERC3 PYURF PIGY PIGY-DT NCOA4P2 lnc-HERC5-3 HERC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIGY-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PIGY-DT Gene

Genomic Locations for PIGY-DT Gene
chr4:88,523,810-88,524,991
(GRCh38/hg38)
Size:
1,182 bases
Orientation:
Plus strand

Genomic View for PIGY-DT Gene

Genes around PIGY-DT on UCSC Golden Path with GeneCards custom track
PIGY-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PIGY-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIGY-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PIGY-DT Gene

Proteins for PIGY-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for PIGY-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIGY-DT Gene

Domains & Families for PIGY-DT Gene

Gene Families for PIGY-DT Gene

HGNC:
genes like me logo Genes that share domains with PIGY-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PIGY-DT Gene

Function for PIGY-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIGY-DT Gene

Localization for PIGY-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIGY-DT Gene

Pathways & Interactions for PIGY-DT Gene

PathCards logo

SuperPathways for PIGY-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for PIGY-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PIGY-DT Gene

Drugs & Compounds for PIGY-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PIGY-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PIGY-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B34BE_9606 lncRNA 326 2

Ensembl: ENST00000598772 (view in UCSC) ,

LNCipedia: lnc-HERC5-1:1,

URS0000D64A35_9606 lncRNA 235 2

Ensembl: ENST00000597259 (view in UCSC) ,

LNCipedia: lnc-HERC5-1:7,

URS00008BED41_9606 lncRNA 1113 2

LNCipedia: lnc-HERC5-1:3,

NONCODE: NONHSAT097366.2,

URS0000D59A82_9606 lncRNA 359 1

LNCipedia: lnc-HERC5-1:6,

URS0000D5BCB9_9606 lncRNA 350 1

LNCipedia: lnc-HERC5-1:5,

PIGY-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PIGY-DT Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PIGY-DT Gene

No ASD Table

Relevant External Links for PIGY-DT Gene

GeneLoc Exon Structure for
PIGY-DT

Expression for PIGY-DT Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIGY-DT Gene

Orthologs for PIGY-DT Gene

Evolution for PIGY-DT Gene

ENSEMBL:
Gene Tree for PIGY-DT (if available)
TreeFam:
Gene Tree for PIGY-DT (if available)

No data available for Orthologs for PIGY-DT Gene

Paralogs for PIGY-DT Gene

No data available for Paralogs for PIGY-DT Gene

Variants for PIGY-DT Gene

Additional dbSNP identifiers (rs#s) for PIGY-DT Gene

Additional Variant Information for PIGY-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIGY-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PIGY-DT Gene

Disorders for PIGY-DT Gene

No disorders were found for PIGY-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIGY-DT Gene

Publications for PIGY-DT Gene

  1. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3

No data available for Mastermind for PIGY-DT Gene

Products for PIGY-DT Gene

Sources for PIGY-DT Gene