PIGY-DT Gene (RNA Gene)

PIGY Divergent Transcript

GC04P088526
GIFtS:
7
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Aliases for PIGY-DT Gene

Data sources for PIGY-DT Gene:

Subcategory (RNA class) for PIGY-DT Gene

lncRNA

Aliases for PIGY-DT Gene

External Ids for PIGY-DT Gene

Summaries for PIGY-DT Gene

GeneCards Summary for PIGY-DT Gene

PIGY-DT (PIGY Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PIGY-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PIGY-DT Gene

Genomics for PIGY-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PIGY-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J088522 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.5 -530 3 TBP ZBTB10 SP1 MXD4 FEZF1 NR2C1 IKZF1 SMAD5 ETS1 IRF2 HERC3 PYURF PIGY PIGY-DT NAP1L5 MEPE NCOA4P2 lnc-HERC5-3 HERC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIGY-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PIGY-DT Gene

Latest Assembly
chr4:88,523,809-88,524,991
(GRCh38/hg38)
Size:
1,183 bases
Orientation:
Plus strand

Previous Assembly
chr4:89,444,961-89,446,142
(GRCh37/hg19 by Entrez Gene)
Size:
1,182 bases
Orientation:
Plus strand

Genomic View for PIGY-DT Gene

Genes around PIGY-DT on UCSC Golden Path with GeneCards custom track
PIGY-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PIGY-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIGY-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PIGY-DT Gene

Proteins for PIGY-DT Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for PIGY-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIGY-DT Gene

Domains & Families for PIGY-DT Gene

Gene Families for PIGY-DT Gene

HGNC:
genes like me logo Genes that share domains with PIGY-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PIGY-DT Gene

Function for PIGY-DT Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIGY-DT Gene

Localization for PIGY-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIGY-DT Gene

Pathways & Interactions for PIGY-DT Gene

PathCards logo

SuperPathways for PIGY-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for PIGY-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PIGY-DT Gene

Drugs & Compounds for PIGY-DT Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for PIGY-DT Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PIGY-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B34BE_9606 lncRNA 326 2

Ensembl: ENST00000598772 (view in UCSC) ,

LNCipedia: lnc-HERC5-1:1,

URS0000D64A35_9606 lncRNA 237 2

Ensembl: ENST00000597259 (view in UCSC) ,

LNCipedia: lnc-HERC5-1:7,

URS00008BED41_9606 lncRNA 1114 2

LNCipedia: lnc-HERC5-1:3,

NONCODE: NONHSAT097366.2,

URS0001BEC825_9606 lncRNA 1113 1

LncBook: HSALNT0074846,

URS0000D59A82_9606 lncRNA 361 1

LNCipedia: lnc-HERC5-1:6,

PIGY-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PIGY-DT Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PIGY-DT Gene

No ASD Table

Relevant External Links for PIGY-DT Gene

GeneLoc Exon Structure for
PIGY-DT

Expression for PIGY-DT Gene

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  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIGY-DT Gene

Orthologs for PIGY-DT Gene

Evolution for PIGY-DT Gene

ENSEMBL:
Gene Tree for PIGY-DT (if available)
TreeFam:
Gene Tree for PIGY-DT (if available)

No data available for Orthologs for PIGY-DT Gene

Paralogs for PIGY-DT Gene

No data available for Paralogs for PIGY-DT Gene

Variants for PIGY-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PIGY-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for PIGY-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIGY-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PIGY-DT Gene

Disorders for PIGY-DT Gene

No disorders were found for PIGY-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIGY-DT Gene

Publications for PIGY-DT Gene

  1. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3

No data available for Mastermind for PIGY-DT Gene

Products for PIGY-DT Gene

Sources for PIGY-DT Gene