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Aliases for PIGBOS1 Gene

Aliases for PIGBOS1 Gene

  • PIGB Opposite Strand 1 2 3 5
  • PIGB Opposite Strand Protein 3 4
  • Protein PIGBOS1 3
  • HP06981 3

External Ids for PIGBOS1 Gene

Summaries for PIGBOS1 Gene

GeneCards Summary for PIGBOS1 Gene

PIGBOS1 (PIGB Opposite Strand 1) is a Protein Coding gene.

Additional gene information for PIGBOS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PIGBOS1 Gene

Genomics for PIGBOS1 Gene

GeneHancer (GH) Regulatory Elements for PIGBOS1 Gene

Promoters and enhancers for PIGBOS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J055317 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 679.4 -0.1 -91 3 HDGF PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 IRF4 YY1 SLC30A9 PIGB PIGBOS1 RAB27A RFX7 DNAAF4 ENSG00000274765
GH15J055194 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 18.9 +122.5 122549 3.4 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 POLR2B E2F8 RSL24D1 PIGB PIGBOS1 RAB27A C15orf65 ENSG00000279145 GC15M057897
GH15J055990 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 19.3 -673.9 -673907 4.4 ATF1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF48 GTF3C2 POLR2B ZNF766 NEDD4 PIGBOS1 PIGB RFX7 PRTG CNOT6LP1 GC15P055749
GH15J055288 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.7 +29.5 29524 3.1 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 IRF4 YY1 SLC30A9 POLR2B RAB27A ENSG00000276533 PIGB RFX7 PIGBOS1 DNAAF4 CCPG1 PIR62136
GH15J055401 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.6 -86.4 -86398 7.7 HDGF PKNOX1 CLOCK ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B C15orf65 CCPG1 RSL24D1 RFX7 NEDD4 PYGO1 DNAAF4 PIGBOS1 PIGB GC15M057886
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIGBOS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIGBOS1 Gene

Genomic Locations for PIGBOS1 Gene
chr15:55,317,184-55,319,161
(GRCh38/hg38)
Size:
1,978 bases
Orientation:
Minus strand
chr15:55,609,382-55,611,359
(GRCh37/hg19)
Size:
1,978 bases
Orientation:
Minus strand

Genomic View for PIGBOS1 Gene

Genes around PIGBOS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PIGBOS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIGBOS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PIGBOS1 Gene

Proteins for PIGBOS1 Gene

  • Protein details for PIGBOS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A0B4J2F0-PIOS1_HUMAN
    Recommended name:
    Protein PIGBOS1
    Protein Accession:
    A0A0B4J2F0

    Protein attributes for PIGBOS1 Gene

    Size:
    54 amino acids
    Molecular mass:
    6313 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PIGBOS1 Gene

Post-translational modifications for PIGBOS1 Gene

No Post-translational modifications

Other Protein References for PIGBOS1 Gene

No data available for DME Specific Peptides for PIGBOS1 Gene

Domains & Families for PIGBOS1 Gene

Gene Families for PIGBOS1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for PIGBOS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PIGBOS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIGBOS1 Gene

Function for PIGBOS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIGBOS1 Gene

Localization for PIGBOS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PIGBOS1 Gene

Gene Ontology (GO) - Cellular Components for PIGBOS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with PIGBOS1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for PIGBOS1 Gene

Pathways & Interactions for PIGBOS1 Gene

SuperPathways for PIGBOS1 Gene

No Data Available

Interacting Proteins for PIGBOS1 Gene

Gene Ontology (GO) - Biological Process for PIGBOS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIGBOS1 Gene

Drugs & Compounds for PIGBOS1 Gene

No Compound Related Data Available

Transcripts for PIGBOS1 Gene

mRNA/cDNA for PIGBOS1 Gene

(4) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PIGBOS1 Gene

No ASD Table

Relevant External Links for PIGBOS1 Gene

GeneLoc Exon Structure for
PIGBOS1
ECgene alternative splicing isoforms for
PIGBOS1

Expression for PIGBOS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PIGBOS1 Gene

NURSA nuclear receptor signaling pathways regulating expression of PIGBOS1 Gene:

PIGBOS1
genes like me logo Genes that share expression patterns with PIGBOS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIGBOS1 Gene

Orthologs for PIGBOS1 Gene

Evolution for PIGBOS1 Gene

ENSEMBL:
Gene Tree for PIGBOS1 (if available)
TreeFam:
Gene Tree for PIGBOS1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for PIGBOS1: view image

No data available for Orthologs for PIGBOS1 Gene

Paralogs for PIGBOS1 Gene

No data available for Paralogs for PIGBOS1 Gene

Variants for PIGBOS1 Gene

Sequence variations from dbSNP and Humsavar for PIGBOS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000042045 -- 55,317,020(-) G/A downstream_transcript_variant
rs1003051521 -- 55,319,155(-) T/G 5_prime_UTR_variant
rs1003272084 -- 55,319,067(-) G/C 5_prime_UTR_variant
rs1003747857 -- 55,320,735(-) T/C upstream_transcript_variant
rs1003843804 -- 55,316,745(-) G/C downstream_transcript_variant

Additional Variant Information for PIGBOS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIGBOS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PIGBOS1 Gene

Disorders for PIGBOS1 Gene

Additional Disease Information for PIGBOS1

No disorders were found for PIGBOS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PIGBOS1 Gene

Publications for PIGBOS1 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 58
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58

Products for PIGBOS1 Gene

Sources for PIGBOS1 Gene

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