Aliases for PID1 Gene

Aliases for PID1 Gene

  • Phosphotyrosine Interaction Domain Containing 1 2 3 5
  • NYGGF4 2 3 4
  • Phosphotyrosine Interaction Domain-Containing Protein 1 3 4
  • PTB-Containing, Cubilin And LRP1-Interacting Protein 3 4
  • P-CLI1 3 4
  • PCLI1 3 4
  • Protein NYGGF4 4
  • HMFN2073 3
  • FLJ20701 2
  • PID1 5

External Ids for PID1 Gene

Previous GeneCards Identifiers for PID1 Gene

  • GC02M229597
  • GC02M229888
  • GC02M221730
  • GC02M229715

Summaries for PID1 Gene

GeneCards Summary for PID1 Gene

PID1 (Phosphotyrosine Interaction Domain Containing 1) is a Protein Coding gene. Diseases associated with PID1 include Pelvic Inflammatory Disease.

UniProtKB/Swiss-Prot Summary for PID1 Gene

  • Increases proliferation of preadipocytes without affecting adipocytic differentiation.

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PID1 Gene

Genomics for PID1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PID1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J229266 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +2.2 2186 5.8 CTCF KDM1A POLR2A RAD21 ATF3 NR2F2 ZNF335 EZH2 TAF1 ZFP36 PID1 TRIP12 HSALNG0022814 lnc-DNER-4 RF00100-073 RN7SKP283
GH02J229406 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 21.8 -137.3 -137271 5.1 CEBPG CREB1 GATAD2A ARID3A TARDBP JUND FOXA1 PRDM1 REST CEBPA ENSG00000287791 LOC107985994 PID1 DNER
GH02J229411 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 21.2 -144.5 -144514 6.4 ATF7 POLR2A ZNF10 CREB1 ATF2 SPI1 SMARCA4 JUND NANOG JUN PID1 DNER LOC107985994 lnc-PID1-3
GH02J229342 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 22.2 -72.2 -72195 3.8 CTCF CEBPB RAD21 SMC3 HNF4A ZNF143 XRCC5 HSALNG0022820 HSALNG0022821 PID1 DNER
GH02J229330 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 18.6 -62.9 -62914 8.8 ZBTB11 SPI1 ZC3H11A REST POLR2A ZNF781 ZNF518A MAX ZNF697 GATA2 PID1 TRIP12 DNER RF00017-3443 lnc-FBXO36-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PID1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for PID1

Top Transcription factor binding sites by QIAGEN in the PID1 gene promoter:
  • aMEF-2
  • C/EBPbeta
  • Egr-1
  • FOXI1
  • HFH-3
  • HTF
  • MEF-2
  • MEF-2A
  • TGIF
  • YY1

Genomic Locations for PID1 Gene

Genomic Locations for PID1 Gene
chr2:228,850,526-229,271,287
(GRCh38/hg38)
Size:
420,762 bases
Orientation:
Minus strand
chr2:229,715,242-230,136,057
(GRCh37/hg19)
Size:
420,816 bases
Orientation:
Minus strand

Genomic View for PID1 Gene

Genes around PID1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PID1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PID1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PID1 Gene

Proteins for PID1 Gene

  • Protein details for PID1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z2X4-PCLI1_HUMAN
    Recommended name:
    PTB-containing, cubilin and LRP1-interacting protein
    Protein Accession:
    Q7Z2X4
    Secondary Accessions:
    • B3KU82
    • Q68CJ2
    • Q6ZUS3
    • Q8IXL0
    • Q9NWP6

    Protein attributes for PID1 Gene

    Size:
    250 amino acids
    Molecular mass:
    28272 Da
    Quaternary structure:
    • Found in a complex with PID1/PCLI1, LRP1 and CUBNI. Interacts with LRP1 and CUBN.
    SequenceCaution:
    • Sequence=BAD38656.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for PID1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PID1 Gene

Post-translational modifications for PID1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PID1 Gene

Domains & Families for PID1 Gene

Gene Families for PID1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for PID1 Gene

Suggested Antigen Peptide Sequences for PID1 Gene

GenScript: Design optimal peptide antigens:
  • Protein NYGGF4 (PCLI1_HUMAN)
genes like me logo Genes that share domains with PID1: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PID1 Gene

Function for PID1 Gene

Molecular function for PID1 Gene

UniProtKB/Swiss-Prot Function:
Increases proliferation of preadipocytes without affecting adipocytic differentiation.
UniProtKB/Swiss-Prot Induction:
Up-regulated in fat of obese subjects.

Phenotypes From GWAS Catalog for PID1 Gene

Gene Ontology (GO) - Molecular Function for PID1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with PID1: view

Phenotypes for PID1 Gene

genes like me logo Genes that share phenotypes with PID1: view

Animal Model Products

CRISPR Products

miRNA for PID1 Gene

miRTarBase miRNAs that target PID1

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PID1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PID1 Gene

Localization for PID1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PID1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PID1 gene
Compartment Confidence
nucleus 3
cytosol 3
extracellular 2
plasma membrane 1
cytoskeleton 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1
endosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Endoplasmic reticulum (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for PID1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA,IDA 16815647
genes like me logo Genes that share ontologies with PID1: view

Pathways & Interactions for PID1 Gene

PathCards logo

SuperPathways for PID1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PID1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001933 negative regulation of protein phosphorylation IDA 19079291
GO:0006112 energy reserve metabolic process IC 20165904
GO:0010628 positive regulation of gene expression IMP 20165904
GO:0010635 regulation of mitochondrial fusion IC 20165904
GO:0042127 regulation of cell proliferation IEA --
genes like me logo Genes that share ontologies with PID1: view

No data available for Pathways by source and SIGNOR curated interactions for PID1 Gene

Drugs & Compounds for PID1 Gene

No Compound Related Data Available

Transcripts for PID1 Gene

mRNA/cDNA for PID1 Gene

5 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PID1

Alternative Splicing Database (ASD) splice patterns (SP) for PID1 Gene

No ASD Table

Relevant External Links for PID1 Gene

GeneLoc Exon Structure for
PID1

Expression for PID1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PID1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PID1 Gene

This gene is overexpressed in Artery - Aorta (x4.4).

Protein differential expression in normal tissues from HIPED for PID1 Gene

This gene is overexpressed in Urinary Bladder (10.8), Gallbladder (9.4), Placenta (9.0), Pancreas (8.5), Prostate (7.9), Ovary (7.8), and Testis (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PID1 Gene



Protein tissue co-expression partners for PID1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PID1

SOURCE GeneReport for Unigene cluster for PID1 Gene:

Hs.745038

mRNA Expression by UniProt/SwissProt for PID1 Gene:

Q7Z2X4-PCLI1_HUMAN
Tissue specificity: Expressed in subcutaneous fat, heart, skeletal muscle, brain, colon, thymus, spleen, kidney, liver, small intestine, placenta, lung and peripheral blood leukocyte.

Evidence on tissue expression from TISSUES for PID1 Gene

  • Nervous system(4.8)
  • Liver(4.6)
  • Intestine(4.4)
  • Muscle(2.2)
  • Heart(2.1)
  • Spleen(2)
genes like me logo Genes that share expression patterns with PID1: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for PID1 Gene

Orthologs for PID1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PID1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia PID1 30 31
  • 99.6 (n)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia PID1 31
  • 94 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia PID1 30 31
  • 92.78 (n)
OneToOne
Dog
(Canis familiaris)
Mammalia PID1 30 31
  • 92.45 (n)
OneToOne
Mouse
(Mus musculus)
Mammalia Pid1 30 17 31
  • 88.68 (n)
OneToOne
Chicken
(Gallus gallus)
Aves PID1 30 31
  • 81.13 (n)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia PID1 31
  • 95 (a)
OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia pid1 30
  • 77.36 (n)
Str.103 30
Zebrafish
(Danio rerio)
Actinopterygii pid1 30 31
  • 71.92 (n)
OneToOne
Species where no ortholog for PID1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for PID1 Gene

ENSEMBL:
Gene Tree for PID1 (if available)
TreeFam:
Gene Tree for PID1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for PID1: view image

Paralogs for PID1 Gene

(1) SIMAP similar genes for PID1 Gene using alignment to 2 proteins:

  • PCLI1_HUMAN
  • F5H314_HUMAN
genes like me logo Genes that share paralogs with PID1: view

No data available for Paralogs for PID1 Gene

Variants for PID1 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for PID1 Gene

PCLI1_HUMAN-Q7Z2X4
Some sequences seem to have a duplication of exon 2.

Additional dbSNP identifiers (rs#s) for PID1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PID1 Gene

Variant ID Type Subtype PubMed ID
dgv18e194 CNV deletion 18987734
esv1360518 CNV deletion 17803354
esv2404043 CNV deletion 18987734
esv2638269 CNV deletion 19546169
esv2657525 CNV deletion 23128226
esv2660840 CNV deletion 23128226
esv2675408 CNV deletion 23128226
esv2721579 CNV deletion 23290073
esv2721580 CNV deletion 23290073
esv2721581 CNV deletion 23290073
esv2721582 CNV deletion 23290073
esv2721585 CNV deletion 23290073
esv2721586 CNV deletion 23290073
esv2721587 CNV deletion 23290073
esv2721588 CNV deletion 23290073
esv3027758 CNV deletion 24192839
esv3561119 CNV deletion 23714750
esv3561120 CNV deletion 23714750
esv3594568 CNV loss 21293372
esv3594569 CNV loss 21293372
esv3594571 CNV loss 21293372
esv3893564 CNV loss 25118596
esv996239 CNV deletion 20482838
nsv1071651 CNV deletion 25765185
nsv1116834 CNV deletion 24896259
nsv1136478 CNV deletion 24896259
nsv3195 CNV deletion 18451855
nsv3196 CNV insertion 18451855
nsv3197 CNV deletion 18451855
nsv476786 CNV novel sequence insertion 20440878
nsv507074 OTHER sequence alteration 20534489
nsv523394 CNV gain 19592680
nsv834563 CNV gain 17160897
nsv834564 CNV gain 17160897
nsv954207 CNV deletion 24416366
nsv954214 CNV deletion 24416366

Variation tolerance for PID1 Gene

Residual Variation Intolerance Score: 45.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.97; 20.05% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PID1 Gene

Human Gene Mutation Database (HGMD)
PID1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PID1

SNP Genotyping and Copy Number Assay Products

No data available for Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PID1 Gene

Disorders for PID1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PID1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
pelvic inflammatory disease
  • pid
- elite association - COSMIC cancer census association via MalaCards
Search PID1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for PID1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with PID1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PID1 Gene

Publications for PID1 Gene

  1. Identification of the ligands of protein interaction domains through a functional approach. (PMID: 17124247) Caratù G … Zambrano N (Molecular & cellular proteomics : MCP 2007) 2 3 4
  2. Identification and characterization of NYGGF4, a novel gene containing a phosphotyrosine-binding (PTB) domain that stimulates 3T3-L1 preadipocytes proliferation. (PMID: 16815647) Wang B … Guo XR (Gene 2006) 2 3 4
  3. Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas. (PMID: 15221005) Yamada S … Nakagawara A (Oncogene 2004) 2 3 4
  4. Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia. (PMID: 21107309) McClay JL … van den Oord EJ (Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 2011) 3 41
  5. Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function. (PMID: 20010835) Hancock DB … London SJ (Nature genetics 2010) 3 41

Products for PID1 Gene

Sources for PID1 Gene