Aliases for PICART1 Gene

Data sources for PICART1 Gene:

RNA type for PICART1 Gene

lncRNA

Aliases for PICART1 Gene

External Ids for PICART1 Gene

Summaries for PICART1 Gene

GeneCards Summary for PICART1 Gene

PICART1 (P53 Inducible Cancer Associated RNA Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PICART1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PICART1 Gene

Genomics for PICART1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PICART1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J050046 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 259.8 -0.4 -350 21.3 ZNF600 IKZF1 JUND ZNF592 CEBPA ZNF223 POLR2A ZIC2 NFIC ZBTB10 ITGA3 PICART1 HSALNG0117243 ENSG00000262837 LUC7L3 FAM117A ENSG00000204584 PDK2 ENSG00000250282 LOC105371824
GH17J050706 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -651.4 -651449 4 BCLAF1 SP1 ZNF207 NCOR1 MYC ZNF600 SIX5 SSRP1 JUND ZNF580 ANKRD40 lnc-LINC00483-7 MBTD1 ENSG00000262837 LOC105371824 UTP18 LUC7L3 ENSG00000250751 PICART1 ABCC3
GH17J050093 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.1 -39.0 -38995 3.4 SP1 ZNF654 ZNF600 SSRP1 KLF9 ZNF223 ZNF10 ZIC2 CHD4 ZBTB10 PDK2 ENSG00000276851 HSALNG0117248 HSALNG0117250 ENSG00000262837 PICART1 ENSG00000250751 LUC7L3 NXPH3 LOC105371824
GH17J049706 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.9 +348.5 348521 3.3 BCLAF1 SP1 ZNF654 ZNF207 NCOR1 MYC ZNF600 IKZF1 SSRP1 ZNF580 ENSG00000250751 HSALNG0117207 SLC35B1 lnc-FAM117A-3 piR-49612 ENSG00000262837 UBE2Z KAT7 CALCOCO2 ENSG00000204584
GH17J050168 Promoter/Enhancer 1.3 Ensembl ENCODE 18 -113.1 -113073 1.6 BCLAF1 ZNF207 MYC ZNF654 ZNF580 ATF2 ZNF223 ZIC2 ZBTB10 CTCF HSALNG0117262 SGCA ENSG00000262837 PICART1 LUC7L3 COL1A1 FAM117A KAT7 NXPH3 LOC105371824
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PICART1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PICART1 Gene

Latest Assembly
chr17:50,048,688-50,056,564
(GRCh38/hg38)
Size:
7,877 bases
Orientation:
Minus strand

Previous Assembly
chr17:48,127,713-48,133,103
(GRCh37/hg19 by Entrez Gene)
Size:
5,391 bases
Orientation:
Minus strand

chr17:48,127,713-48,133,103
(GRCh37/hg19 by Ensembl)
Size:
5,391 bases
Orientation:
Minus strand

Genomic View for PICART1 Gene

Genes around PICART1 on UCSC Golden Path with GeneCards custom track
PICART1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PICART1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PICART1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PICART1 Gene

Proteins for PICART1 Gene

Post-translational modifications for PICART1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PICART1 Gene

Domains & Families for PICART1 Gene

Gene Families for PICART1 Gene

genes like me logo Genes that share domains with PICART1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PICART1 Gene

Function for PICART1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PICART1 Gene

Localization for PICART1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PICART1 Gene

Pathways & Interactions for PICART1 Gene

PathCards logo

SuperPathways for PICART1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PICART1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PICART1 Gene

Drugs & Compounds for PICART1 Gene

No Compound Related Data Available

Transcripts for PICART1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PICART1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000144468_9606 lncRNA 2533 5

RefSeq: NR_038230,

Ensembl: ENST00000499842 (view in UCSC) ,

LncBook: HSALNT0242280,

LNCipedia: lnc-DLX3-3:6,

NONCODE: NONHSAT054578.2,

URS00008BC6A7_9606 lncRNA 1732 3

LncBook: HSALNT0242282,

LNCipedia: lnc-DLX3-3:12,

NONCODE: NONHSAT054579.2,

URS00009B8462_9606 lncRNA 2533 2

LncBook: HSALNT0242281,

NONCODE: NONHSAT176330.1,

URS00008BE255_9606 lncRNA 756 2

LNCipedia: lnc-DLX3-3:8,

NONCODE: NONHSAT054580.2,

URS0000D57F2E_9606 lncRNA 607 2

LncBook: HSALNT0242283,

LNCipedia: lnc-DLX3-3:11,

PICART1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PICART1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PICART1 Gene

No ASD Table

Relevant External Links for PICART1 Gene

GeneLoc Exon Structure for
PICART1

Expression for PICART1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PICART1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PICART1 Gene

Orthologs for PICART1 Gene

Evolution for PICART1 Gene

ENSEMBL:
Gene Tree for PICART1 (if available)
TreeFam:
Gene Tree for PICART1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PICART1

No data available for Orthologs for PICART1 Gene

Paralogs for PICART1 Gene

No data available for Paralogs for PICART1 Gene

Variants for PICART1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PICART1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PICART1 Gene

Variant ID Type Subtype PubMed ID
esv24435 CNV loss 19812545
nsv509660 CNV insertion 20534489
nsv833474 CNV loss 17160897

Additional Variant Information for PICART1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PICART1
Leiden Open Variation Database (LOVD)
PICART1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PICART1 Gene

Disorders for PICART1 Gene

Additional Disease Information for PICART1

No disorders were found for PICART1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PICART1 Gene

Publications for PICART1 Gene

  1. Long non-coding RNA PICART1 suppresses proliferation and promotes apoptosis in lung cancer cells by inhibiting JAK2/STAT3 signaling. (PMID: 29940776) Zhao JM … Gao YF (Neoplasma 2018) 2 3
  2. p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. (PMID: 28339031) Cao Y … Cao D (International journal of oncology 2017) 2 3
  3. Long non-coding RNA PICART1 inhibits cell proliferation by regulating the PI3K/AKT and MAPK/ERK signaling pathways in gastric cancer. (PMID: 30720166) Li JF … Zhang Y (European review for medical and pharmacological sciences 2019) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for PICART1 Gene

Sources for PICART1 Gene