Aliases for PHKA2-AS1 Gene

Subcategory (RNA class) for PHKA2-AS1 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for PHKA2-AS1 Gene

  • PHKA2 Antisense RNA 1 2 3 5
  • PHKA2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG054118 92
  • PHKA2-AS1 2

External Ids for PHKA2-AS1 Gene

Previous GeneCards Identifiers for PHKA2-AS1 Gene

  • GC0XP018910

Summaries for PHKA2-AS1 Gene

GeneCards Summary for PHKA2-AS1 Gene

PHKA2-AS1 (PHKA2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PHKA2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PHKA2-AS1 Gene

Genomics for PHKA2-AS1 Gene

GeneHancer (GH) Regulatory Elements for PHKA2-AS1 Gene

Promoters and enhancers for PHKA2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ018888 Enhancer 0.4 ENCODE 500.7 -0.2 -169 2.7 POLR2A SMARCA4 PAF1 AGO2 PHKA2-AS1 lnc-PHKA2-1 RF00017-8193
GH0XJ018892 Enhancer 0.2 Ensembl 500.7 +1.8 1805 0.2 PHKA2-AS1 NONHSAG054120.2 RF00017-8193
GH0XJ019342 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.9 +454.0 454005 3.4 NRF1 POLR2G SP1 ZFX POLR2A ZNF423 ZBTB26 MYC CTBP1 ATF2 PDHA1 HE855935 RF00017-8198 PHKA2 PHKA2-AS1
GH0XJ018855 Enhancer 0.9 Ensembl ENCODE 12.6 -33.9 -33909 1.2 SP1 EP300 TRIM22 EZH2 TCF12 CBFB SMC3 ZNF207 MEF2B CHD1 piR-55985-207 PHKA2-AS1 PHKA2 LOC100130035 RF00017-8193
GH0XJ019046 Enhancer 0.8 Ensembl ENCODE 11.9 +156.6 156569 1.5 TCF12 RFX1 FOS FOSL2 CEBPB JUN SPI1 ATF3 NR3C1 SIN3A PHKA2 PHKA2-AS1 lnc-PHKA2-2 FJ601684-476 LOC101928415 ADGRG2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PHKA2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PHKA2-AS1 Gene

Genomic Locations for PHKA2-AS1 Gene
chrX:18,890,296-18,894,975
(GRCh38/hg38)
Size:
4,680 bases
Orientation:
Plus strand
chrX:18,908,414-18,913,093
(GRCh37/hg19)
Size:
4,680 bases
Orientation:
Plus strand

Genomic View for PHKA2-AS1 Gene

Genes around PHKA2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PHKA2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PHKA2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PHKA2-AS1 Gene

Proteins for PHKA2-AS1 Gene

Post-translational modifications for PHKA2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PHKA2-AS1 Gene

Domains & Families for PHKA2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PHKA2-AS1 Gene

Function for PHKA2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PHKA2-AS1 Gene

Localization for PHKA2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PHKA2-AS1 Gene

Pathways & Interactions for PHKA2-AS1 Gene

PathCards logo

SuperPathways for PHKA2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PHKA2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PHKA2-AS1 Gene

Drugs & Compounds for PHKA2-AS1 Gene

No Compound Related Data Available

Transcripts for PHKA2-AS1 Gene

mRNA/cDNA for PHKA2-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PHKA2-AS1 Gene

No ASD Table

Relevant External Links for PHKA2-AS1 Gene

GeneLoc Exon Structure for
PHKA2-AS1

Expression for PHKA2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PHKA2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PHKA2-AS1 Gene

This gene is overexpressed in Liver (x5.3).

SOURCE GeneReport for Unigene cluster for PHKA2-AS1 Gene:

Hs.607628
genes like me logo Genes that share expression patterns with PHKA2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PHKA2-AS1 Gene

Orthologs for PHKA2-AS1 Gene

Evolution for PHKA2-AS1 Gene

ENSEMBL:
Gene Tree for PHKA2-AS1 (if available)
TreeFam:
Gene Tree for PHKA2-AS1 (if available)

No data available for Orthologs for PHKA2-AS1 Gene

Paralogs for PHKA2-AS1 Gene

No data available for Paralogs for PHKA2-AS1 Gene

Variants for PHKA2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PHKA2-AS1 Gene

SNP ID Clinical significance and condition Chr 0X pos Variation AA Info Type
664908 Uncertain Significance: Glycogen storage disease type IXa1 18,893,564(+) C/T MISSENSE_VARIANT
694637 Uncertain Significance: Glycogen storage disease type IXa1 18,893,565(+) C/T MISSENSE_VARIANT
rs1064794657 Likely Pathogenic: not provided 18,893,591(+) TAAA/T INFRAME_DELETION
rs112249974 Benign: not specified 18,893,488(+) T/C SYNONYMOUS_VARIANT
rs137852288 Pathogenic: Glycogen storage disease type IXa1 18,893,579(+) G/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for PHKA2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PHKA2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2752317 CNV gain 17911159
esv33517 CNV loss 17666407
esv3576793 CNV gain 25503493
nsv508754 CNV insertion 20534489

Additional Variant Information for PHKA2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PHKA2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PHKA2-AS1 Gene

Disorders for PHKA2-AS1 Gene

Additional Disease Information for PHKA2-AS1

No disorders were found for PHKA2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PHKA2-AS1 Gene

Publications for PHKA2-AS1 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for PHKA2-AS1 Gene

Sources for PHKA2-AS1 Gene