Aliases for PHKA2-AS1 Gene

Subcategory (RNA class) for PHKA2-AS1 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for PHKA2-AS1 Gene

  • PHKA2 Antisense RNA 1 2 3 5
  • PHKA2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PHKA2-AS1 2 5
  • NONHSAG054118.2 91

External Ids for PHKA2-AS1 Gene

Previous GeneCards Identifiers for PHKA2-AS1 Gene

  • GC0XP018910

Summaries for PHKA2-AS1 Gene

GeneCards Summary for PHKA2-AS1 Gene

PHKA2-AS1 (PHKA2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PHKA2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PHKA2-AS1 Gene

Genomics for PHKA2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PHKA2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ018888 Enhancer 0.4 ENCODE 600.7 -0.2 -169 2.7 POLR2A PAF1 SMARCA4 PHKA2-AS1 lnc-PHKA2-1 RF00017-8195 PHKA2 PPEF1
GH0XJ018892 Enhancer 0.2 Ensembl 600.7 +1.8 1805 0.2 PHKA2-AS1 NONHSAG054120.2 RF00017-8195 PHKA2 PPEF1
GH0XJ019342 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.9 +454.0 454005 3.4 SP1 CREB1 ZNF629 SOX13 ZNF692 POLR2A ZNF7 MTA2 RBFOX2 MTA1 PDHA1 HE855935 RF00017-8200 PHKA2 PHKA2-AS1 MAP3K15
GH0XJ018855 Enhancer 0.9 Ensembl ENCODE 12.6 -33.9 -33909 1.2 SP1 STAT3 IKZF2 TRIM22 EED YBX1 DPF2 RELB RUNX3 GATAD2B piR-55985-207 PHKA2-AS1 PHKA2 piR-32214-712 RF00017-8195 PPEF1
GH0XJ019046 Enhancer 0.8 Ensembl ENCODE 11.9 +156.6 156569 1.5 PRDM10 CEBPB SP1 RFX1 ATF3 NR3C1 JUN ZBTB48 PKNOX1 JUND PHKA2 PHKA2-AS1 lnc-PHKA2-2 FJ601684-476 ENSG00000286724 LOC101928415 ADGRG2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PHKA2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PHKA2-AS1 Gene

Genomic Locations for PHKA2-AS1 Gene
chrX:18,890,296-18,894,975
(GRCh38/hg38)
Size:
4,680 bases
Orientation:
Plus strand
chrX:18,908,414-18,913,093
(GRCh37/hg19)
Size:
4,680 bases
Orientation:
Plus strand

Genomic View for PHKA2-AS1 Gene

Genes around PHKA2-AS1 on UCSC Golden Path with GeneCards custom track
PHKA2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PHKA2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PHKA2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PHKA2-AS1 Gene

Proteins for PHKA2-AS1 Gene

Post-translational modifications for PHKA2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PHKA2-AS1 Gene

Domains & Families for PHKA2-AS1 Gene

Gene Families for PHKA2-AS1 Gene

genes like me logo Genes that share domains with PHKA2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PHKA2-AS1 Gene

Function for PHKA2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PHKA2-AS1 Gene

Localization for PHKA2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PHKA2-AS1 Gene

Pathways & Interactions for PHKA2-AS1 Gene

PathCards logo

SuperPathways for PHKA2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PHKA2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PHKA2-AS1 Gene

Drugs & Compounds for PHKA2-AS1 Gene

No Compound Related Data Available

Transcripts for PHKA2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PHKA2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CB2F_9606 lncRNA 1296 2

HGNC: 44110,

RefSeq: NR_029379,

URS00003E520D_9606 lncRNA 597 2

Ensembl: ENST00000439295 (view in UCSC) ,

NONCODE: NONHSAT136427.2,

URS0000EEB823_9606 lncRNA 1591 1

Ensembl: ENST00000654006 (view in UCSC) ,

URS000000F6A3_9606 lncRNA 656 1

Ensembl: ENST00000452900 (view in UCSC) ,

URS00008B7EEB_9606 lncRNA 1296 1

NONCODE: NONHSAT136426.2,

PHKA2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PHKA2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PHKA2-AS1 Gene

No ASD Table

Relevant External Links for PHKA2-AS1 Gene

GeneLoc Exon Structure for
PHKA2-AS1

Expression for PHKA2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PHKA2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PHKA2-AS1 Gene

This gene is overexpressed in Liver (x5.3).

SOURCE GeneReport for Unigene cluster for PHKA2-AS1 Gene:

Hs.607628
genes like me logo Genes that share expression patterns with PHKA2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PHKA2-AS1 Gene

Orthologs for PHKA2-AS1 Gene

Evolution for PHKA2-AS1 Gene

ENSEMBL:
Gene Tree for PHKA2-AS1 (if available)
TreeFam:
Gene Tree for PHKA2-AS1 (if available)

No data available for Orthologs for PHKA2-AS1 Gene

Paralogs for PHKA2-AS1 Gene

No data available for Paralogs for PHKA2-AS1 Gene

Variants for PHKA2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PHKA2-AS1 Gene

SNP ID Clinical significance and condition Chr 0X pos Variation AA Info Type
664908 Uncertain Significance: Glycogen storage disease type IXa1 18,893,564(+) C/T MISSENSE_VARIANT
694637 Uncertain Significance: Glycogen storage disease type IXa1 18,893,565(+) C/T MISSENSE_VARIANT
740335 Likely Benign: not provided 18,894,297(+) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
746664 Likely Benign: not provided 18,894,219(+) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
803725 Pathogenic: Glycogen storage disease type IXa1 18,894,344(+) G/A NONSENSE,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for PHKA2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PHKA2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2752317 CNV gain 17911159
esv33517 CNV loss 17666407
esv3576793 CNV gain 25503493
nsv508754 CNV insertion 20534489

Additional Variant Information for PHKA2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PHKA2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PHKA2-AS1 Gene

Disorders for PHKA2-AS1 Gene

Additional Disease Information for PHKA2-AS1

No disorders were found for PHKA2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PHKA2-AS1 Gene

Publications for PHKA2-AS1 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for PHKA2-AS1 Gene

Sources for PHKA2-AS1 Gene