Aliases for PHF5CP Gene

Aliases for PHF5CP Gene

  • PHD Finger Protein 5C Pseudogene 2 3 5
  • PHD Finger Protein 5A Pseudogene 1 2 3
  • PHF5A Pseudogene 1 3
  • PHF5AP1 3

External Ids for PHF5CP Gene

Previous HGNC Symbols for PHF5CP Gene

  • PHF5AP1

Previous GeneCards Identifiers for PHF5CP Gene

  • GC19M019559
  • GC19M019698

Summaries for PHF5CP Gene

GeneCards Summary for PHF5CP Gene

PHF5CP (PHD Finger Protein 5C Pseudogene) is a Pseudogene.

Additional gene information for PHF5CP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PHF5CP Gene

Genomics for PHF5CP Gene

GeneHancer (GH) Regulatory Elements for PHF5CP Gene

Promoters and enhancers for PHF5CP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J019587 Promoter/Enhancer 0.5 Ensembl dbSUPER 750.6 +0.1 138 0.2 PHF5CP lnc-LPAR2-2 piR-61945-250 PBX4
GH19J019589 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.6 -2.9 -2853 3.2 SP1 RELA HLF MAX MNT MLLT1 POLR2A ZNF687 CREM FOSL2 GATAD2A PBX4 GMIP LPAR2 ATP13A1 RFXANK ZNF14 MAU2 ZNF506 PHF5CP
GH19J019594 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -10.6 -10553 8.9 SP1 TCF7L2 NR2F6 ZNF217 ETV6 RELA HLF MAX TEAD4 ELF3 LPAR2 GATAD2A ATP13A1 GMIP PBX4 NDUFA13 RFXANK ZNF14 MAU2 ZNF506
GH19J019604 Promoter 0.3 Ensembl 0.4 -16.5 -16462 0.6 ENSG00000259242 LPAR2 NDUFA13 ATP13A1 GMIP PBX4 PHF5CP
GH19J019593 Enhancer 0.2 dbSUPER 0.4 -5.2 -5164 0.8 PHF5CP ENSG00000259242 PBX4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PHF5CP on UCSC Golden Path with GeneCards custom track

Genomic Locations for PHF5CP Gene

Genomic Locations for PHF5CP Gene
chr19:19,587,606-19,588,439
(GRCh38/hg38)
Size:
834 bases
Orientation:
Minus strand
chr19:19,698,415-19,699,248
(GRCh37/hg19)
Size:
834 bases
Orientation:
Minus strand

Genomic View for PHF5CP Gene

Genes around PHF5CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PHF5CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PHF5CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PHF5CP Gene

Proteins for PHF5CP Gene

Post-translational modifications for PHF5CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for PHF5CP Gene

Domains & Families for PHF5CP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PHF5CP Gene

Function for PHF5CP Gene

Phenotypes From GWAS Catalog for PHF5CP Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PHF5CP Gene

Localization for PHF5CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PHF5CP Gene

Pathways & Interactions for PHF5CP Gene

PathCards logo

SuperPathways for PHF5CP Gene

No Data Available

Gene Ontology (GO) - Biological Process for PHF5CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PHF5CP Gene

Drugs & Compounds for PHF5CP Gene

No Compound Related Data Available

Transcripts for PHF5CP Gene

mRNA/cDNA for PHF5CP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PHF5CP Gene

No ASD Table

Relevant External Links for PHF5CP Gene

GeneLoc Exon Structure for
PHF5CP
ECgene alternative splicing isoforms for
PHF5CP

Expression for PHF5CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PHF5CP Gene

NURSA nuclear receptor signaling pathways regulating expression of PHF5CP Gene:

PHF5CP
genes like me logo Genes that share expression patterns with PHF5CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PHF5CP Gene

Orthologs for PHF5CP Gene

Evolution for PHF5CP Gene

ENSEMBL:
Gene Tree for PHF5CP (if available)
TreeFam:
Gene Tree for PHF5CP (if available)

No data available for Orthologs for PHF5CP Gene

Paralogs for PHF5CP Gene

No data available for Paralogs for PHF5CP Gene

Variants for PHF5CP Gene

Additional Variant Information for PHF5CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PHF5CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PHF5CP Gene

Disorders for PHF5CP Gene

No disorders were found for PHF5CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PHF5CP Gene

Publications for PHF5CP Gene

  1. Identification and characterization of a novel murine multigene family containing a PHD-finger-like motif. (PMID: 12054543) Trappe R … Engel W (Biochemical and biophysical research communications 2002) 3 56

No data available for External Links for PHF5CP Gene

Products for PHF5CP Gene

Sources for PHF5CP Gene