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Aliases for PHF5CP Gene
Aliases for PHF5CP Gene
External Ids for PHF5CP Gene
- HGNC: 32385
- Entrez Gene: 450232
- Ensembl: ENSG00000267178
Previous HGNC Symbols for PHF5CP Gene
- PHF5AP1
Previous GeneCards Identifiers for PHF5CP Gene
- GC19M019559
- GC19M019698
Summaries for PHF5CP Gene
GeneCards Summary for PHF5CP Gene
PHF5CP (PHD Finger Protein 5C Pseudogene) is a Pseudogene.
Additional gene information for PHF5CP Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PHF5CP Gene
Genomics for PHF5CP Gene
GeneHancer (GH) Regulatory Elements for PHF5CP Gene
Promoters and enhancers for PHF5CP Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH19J019587 | Promoter/Enhancer | 0.5 | Ensembl dbSUPER | 750.6 | +0.1 | 138 | 0.2 | PHF5CP lnc-LPAR2-2 piR-61945-250 PBX4 | ||
| GH19J019589 | Enhancer | 1.2 | FANTOM5 ENCODE dbSUPER | 0.6 | -2.9 | -2853 | 3.2 | SP1 RELA HLF MAX MNT MLLT1 POLR2A ZNF687 CREM FOSL2 | GATAD2A PBX4 GMIP LPAR2 ATP13A1 RFXANK ZNF14 MAU2 ZNF506 PHF5CP | |
| GH19J019594 | Enhancer | 1.3 | FANTOM5 ENCODE dbSUPER | 0.4 | -10.6 | -10553 | 8.9 | SP1 TCF7L2 NR2F6 ZNF217 ETV6 RELA HLF MAX TEAD4 ELF3 | LPAR2 GATAD2A ATP13A1 GMIP PBX4 NDUFA13 RFXANK ZNF14 MAU2 ZNF506 | |
| GH19J019604 | Promoter | 0.3 | Ensembl | 0.4 | -16.5 | -16462 | 0.6 | ENSG00000259242 LPAR2 NDUFA13 ATP13A1 GMIP PBX4 PHF5CP | ||
| GH19J019593 | Enhancer | 0.2 | dbSUPER | 0.4 | -5.2 | -5164 | 0.8 | PHF5CP ENSG00000259242 PBX4 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around PHF5CP on UCSC Golden Path with GeneCards custom track
Genomic Locations for PHF5CP Gene
Genomic Locations for PHF5CP Gene
- chr19:19,587,606-19,588,439
- (GRCh38/hg38)
- Size:
- 834 bases
- Orientation:
- Minus strand
- chr19:19,698,415-19,699,248
- (GRCh37/hg19)
- Size:
- 834 bases
- Orientation:
- Minus strand
Genomic View for PHF5CP Gene
Genes around PHF5CP on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19p13.11 by HGNC
- 19p13.11 by Entrez Gene
- 19p13.11 by Ensembl
PHF5CP Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for PHF5CP Gene
Proteins for PHF5CP Gene
Post-translational modifications for PHF5CP Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for PHF5CP
- Origene Custom Protein Services for PHF5CP
No data available for DME Specific Peptides for PHF5CP Gene
Domains & Families for PHF5CP Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PHF5CP Gene
Function for PHF5CP Gene
Phenotypes From GWAS Catalog for PHF5CP Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for PHF5CP
- Applied Biological Materials (abm): CRISPR Clones for PHF5CP - Select products 50% OFF >
- * PHF5CP CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * PHF5CP CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PHF5CP Gene
Localization for PHF5CP Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PHF5CP Gene
Transcripts for PHF5CP Gene
mRNA/cDNA for PHF5CP Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000591298 325 bps (ENST00000591298.3)
CRISPR Products
- Browse CRISPR knockouts for PHF5CP
- Applied Biological Materials (abm): CRISPR Clones for PHF5CP - Select products 50% OFF >
- * PHF5CP CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * PHF5CP CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for PHF5CP Gene
NURSA nuclear receptor signaling pathways regulating expression of PHF5CP Gene:
PHF5CP
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PHF5CP Gene
Orthologs for PHF5CP Gene
No data available for Orthologs for PHF5CP Gene
Paralogs for PHF5CP Gene
No data available for Paralogs for PHF5CP Gene
Variants for PHF5CP Gene
Additional Variant Information for PHF5CP Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- PHF5CP
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PHF5CP Gene
Disorders for PHF5CP Gene
No disorders were found for PHF5CP Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PHF5CP Gene
Publications for PHF5CP Gene
- Identification and characterization of a novel murine multigene family containing a PHD-finger-like motif. (PMID: 12054543) Trappe R … Engel W (Biochemical and biophysical research communications 2002) 3 56
No data available for External Links for PHF5CP Gene
Products for PHF5CP Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for PHF5CP
- Origene Custom Protein Services for PHF5CP
- Browse OriGene Inhibitory RNA Products For PHF5CP
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for PHF5CP
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For PHF5CP
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for PHF5CP
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for PHF5CP
- Search GeneCopoeia for miRNA 3'UTR Target clone products for PHF5CP
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for PHF5CP
Sources for PHF5CP Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource