Aliases for PHEX-AS1 Gene

Data sources for PHEX-AS1 Gene:

Subcategory (RNA class) for PHEX-AS1 Gene

lncRNA

Aliases for PHEX-AS1 Gene

External Ids for PHEX-AS1 Gene

Previous GeneCards Identifiers for PHEX-AS1 Gene

  • GC00U933239

Summaries for PHEX-AS1 Gene

GeneCards Summary for PHEX-AS1 Gene

PHEX-AS1 (PHEX Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PHEX-AS1 include Hypophosphatemic Rickets, X-Linked Dominant.

Additional gene information for PHEX-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PHEX-AS1 Gene

Genomics for PHEX-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PHEX-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ022133 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 12.9 +54.5 54491 3.2 ZNF217 CTCF CEBPB ZNF623 REST MBD2 TRIM22 SMC3 RAD21 CTBP1 piR-33804-174 lnc-SMPX-6 PHEX-AS1 PHEX piR-50437-683 CBLL2
GH0XJ022129 Enhancer 0.2 Ensembl 12.4 +60.1 60127 1.2 PHEX-AS1 piR-33804-174 lnc-SMPX-6 piR-61945-526 PHEX CBLL2
GH0XJ022192 Enhancer 0.6 Ensembl 0.7 -2.9 -2887 0.5 CTCF REST SMC3 RAD21 RFX5 HNF4A IKZF1 TFAP4 YY1 GABPA PHEX-AS1 piR-60885-169 CBLL2 PHEX
GH0XJ022220 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.3 -31.2 -31229 1.6 JUND FOS EP300 CEBPB piR-60885-169 PHEX-AS1 CBLL2 PHEX
GH0XJ022165 Enhancer 0.5 Ensembl 0.3 +24.4 24428 1 ZBTB40 TRIM28 EGR2 FOS HIC1 RF01061-188 piR-50437-683 PHEX-AS1 CBLL2 PHEX
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PHEX-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PHEX-AS1 Gene

Latest Assembly
chrX:22,162,689-22,189,928
(GRCh38/hg38)
Size:
27,240 bases
Orientation:
Minus strand

Previous Assembly
chrX:22,180,849-22,191,100
(GRCh37/hg19 by Entrez Gene)
Size:
10,252 bases
Orientation:
Minus strand

chrX:22,180,850-22,191,100
(GRCh37/hg19 by Ensembl)
Size:
10,251 bases
Orientation:
Minus strand

Genomic View for PHEX-AS1 Gene

Genes around PHEX-AS1 on UCSC Golden Path with GeneCards custom track
PHEX-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PHEX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PHEX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PHEX-AS1 Gene

Proteins for PHEX-AS1 Gene

Post-translational modifications for PHEX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PHEX-AS1 Gene

Domains & Families for PHEX-AS1 Gene

Gene Families for PHEX-AS1 Gene

genes like me logo Genes that share domains with PHEX-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PHEX-AS1 Gene

Function for PHEX-AS1 Gene

Phenotypes From GWAS Catalog for PHEX-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PHEX-AS1 Gene

Localization for PHEX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PHEX-AS1 Gene

Pathways & Interactions for PHEX-AS1 Gene

PathCards logo

SuperPathways for PHEX-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PHEX-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PHEX-AS1 Gene

Drugs & Compounds for PHEX-AS1 Gene

No Compound Related Data Available

Transcripts for PHEX-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PHEX-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000486829_9606 lncRNA 1906 2

Ensembl: ENST00000424650 (view in UCSC) ,

LNCipedia: PHEX-AS1:1,

URS000075E03E_9606 lncRNA 1907 1

RefSeq: NR_046639,

URS00008B8042_9606 lncRNA 1907 3

LncBook: HSALNT0280842,

LNCipedia: PHEX-AS1:2,

NONCODE: NONHSAT136477.2,

URS00009BA0EE_9606 lncRNA 1906 2

LncBook: HSALNT0280843,

NONCODE: NONHSAT223233.1,

URS0001BCE151_9606 lncRNA 6292 1

LncBook: HSALNT0280840,

PHEX-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PHEX-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PHEX-AS1 Gene

No ASD Table

Relevant External Links for PHEX-AS1 Gene

GeneLoc Exon Structure for
PHEX-AS1

Expression for PHEX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PHEX-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PHEX-AS1 Gene

This gene is overexpressed in Brain - Cerebellum (x9.2), Brain - Cerebellar Hemisphere (x9.1), Brain - Putamen (basal ganglia) (x5.0), and Brain - Caudate (basal ganglia) (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PHEX-AS1

SOURCE GeneReport for Unigene cluster for PHEX-AS1 Gene:

Hs.633194
genes like me logo Genes that share expression patterns with PHEX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PHEX-AS1 Gene

Orthologs for PHEX-AS1 Gene

Evolution for PHEX-AS1 Gene

ENSEMBL:
Gene Tree for PHEX-AS1 (if available)
TreeFam:
Gene Tree for PHEX-AS1 (if available)

No data available for Orthologs for PHEX-AS1 Gene

Paralogs for PHEX-AS1 Gene

No data available for Paralogs for PHEX-AS1 Gene

Variants for PHEX-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PHEX-AS1 Gene

SNP ID Clinical significance and condition Chr 0X pos Variation AA Info Type
872224 Pathogenic: not provided 22,168,390(-) G/T
NM_000444.6(PHEX):c.1482+1G>T
SPLICE_DONOR
940437 Pathogenic: not provided 22,168,390(-) G/C
NM_000444.6(PHEX):c.1482+1G>C
SPLICE_DONOR
942929 Pathogenic: not provided 22,168,391(-) T/G
NM_000444.6(PHEX):c.1482+2T>G
SPLICE_DONOR
944613 Likely Pathogenic: not provided 22,164,572(-) TTCACCAGCATGCTCT
NM_000444.6(PHEX):c.1405-3739_1459del
SPLICE_ACCEPTOR
964395 Pathogenic: not provided 22,168,392(-) A/C
NM_000444.6(PHEX):c.1482+3A>C
INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PHEX-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for PHEX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PHEX-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PHEX-AS1 Gene

Disorders for PHEX-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PHEX-AS1 Gene - From: CVR

Disorder Aliases PubMed IDs
hypophosphatemic rickets, x-linked dominant
  • xlhr
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PHEX-AS1

genes like me logo Genes that share disorders with PHEX-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PHEX-AS1 Gene

Publications for PHEX-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for PHEX-AS1 Gene

Sources for PHEX-AS1 Gene