Aliases for PHC2-AS1 Gene

Subcategory (RNA class) for PHC2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PHC2-AS1 Gene

  • PHC2 Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG000984 92
  • HSALNG0002397 167
  • Lnc-ZNF362-2 168
  • AL513327.2 5
  • PHC2-AS1 2

External Ids for PHC2-AS1 Gene

Summaries for PHC2-AS1 Gene

GeneCards Summary for PHC2-AS1 Gene

PHC2-AS1 (PHC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PHC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PHC2-AS1 Gene

Genomics for PHC2-AS1 Gene

GeneHancer (GH) Regulatory Elements for PHC2-AS1 Gene

Promoters and enhancers for PHC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J033337 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -5.8 -5844 14.1 EP300 FOXK2 ZBTB40 ZSCAN5C SIN3A NRF1 TCF12 POLR2G NCOR1 GTF2E2 PHC2 A3GALT2 ENSG00000225313 S100PBP TRIM62 AK2 RNF19B PHC2-AS1 RN7SKP16 lnc-A3GALT2-5
GH01J033361 Enhancer 1.8 VISTA FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +14.2 14236 7 EP300 CTCF ZIC2 ZBTB10 AFF1 REST RFX1 TOE1 MYC ZNF662 ZBTB8A RBBP4 ZSCAN20 S100PBP BSDC1 PHC2 ZBTB8B CSMD2 ZBTB8OS A3GALT2
GH01J033358 Enhancer 0.3 dbSUPER 0.4 +8.7 8733 0.8 ZNF24 STAT3 piR-55627-003 A3GALT2 PHC2-AS1 lnc-ZSCAN20-2 PHC2
GH01J033359 Enhancer 0.3 dbSUPER 0.4 +9.5 9493 0.6 ZNF24 STAT3 A3GALT2 piR-55627-003 PHC2-AS1 lnc-ZSCAN20-2 PHC2
GH01J033356 Enhancer 0.3 Ensembl dbSUPER 0.4 +7.9 7928 0.4 piR-31432-028 piR-45471-021 piR-46662-030 piR-54764-023 piR-55627-003 PHC2-AS1 lnc-ZSCAN20-2 PHC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PHC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PHC2-AS1 Gene

Genomic Locations for PHC2-AS1 Gene
chr1:33,350,073-33,366,159
(GRCh38/hg38)
Size:
16,087 bases
Orientation:
Plus strand
chr1:33,815,953-33,828,846
(GRCh37/hg19)
Size:
12,894 bases
Orientation:
Plus strand

Genomic View for PHC2-AS1 Gene

Genes around PHC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PHC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PHC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PHC2-AS1 Gene

Proteins for PHC2-AS1 Gene

Post-translational modifications for PHC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PHC2-AS1 Gene

Domains & Families for PHC2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PHC2-AS1 Gene

Function for PHC2-AS1 Gene

Phenotypes From GWAS Catalog for PHC2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PHC2-AS1 Gene

Localization for PHC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PHC2-AS1 Gene

Pathways & Interactions for PHC2-AS1 Gene

PathCards logo

SuperPathways for PHC2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PHC2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PHC2-AS1 Gene

Drugs & Compounds for PHC2-AS1 Gene

No Compound Related Data Available

Transcripts for PHC2-AS1 Gene

mRNA/cDNA for PHC2-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PHC2-AS1 Gene

No ASD Table

Relevant External Links for PHC2-AS1 Gene

GeneLoc Exon Structure for
PHC2-AS1

Expression for PHC2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PHC2-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PHC2-AS1 Gene

Orthologs for PHC2-AS1 Gene

Evolution for PHC2-AS1 Gene

ENSEMBL:
Gene Tree for PHC2-AS1 (if available)
TreeFam:
Gene Tree for PHC2-AS1 (if available)

No data available for Orthologs for PHC2-AS1 Gene

Paralogs for PHC2-AS1 Gene

No data available for Paralogs for PHC2-AS1 Gene

Variants for PHC2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PHC2-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
725556 Benign: not provided 33,355,130(+) C/T MISSENSE_VARIANT
743098 Likely Benign: not provided 33,354,415(+) G/A MISSENSE_VARIANT
767664 Benign: not provided 33,354,919(+) G/A SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for PHC2-AS1 Gene

Additional Variant Information for PHC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PHC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PHC2-AS1 Gene

Disorders for PHC2-AS1 Gene

No disorders were found for PHC2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PHC2-AS1 Gene

Publications for PHC2-AS1 Gene

No publications were found for PHC2-AS1 Gene.

No data available for Mastermind for PHC2-AS1 Gene

Products for PHC2-AS1 Gene

Sources for PHC2-AS1 Gene