Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PHACTR2-AS1 Gene

Subcategory (RNA class) for PHACTR2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PHACTR2-AS1 Gene

  • PHACTR2 Antisense RNA 1 2 3 5

External Ids for PHACTR2-AS1 Gene

Summaries for PHACTR2-AS1 Gene

GeneCards Summary for PHACTR2-AS1 Gene

PHACTR2-AS1 (PHACTR2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PHACTR2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PHACTR2-AS1 Gene

Genomics for PHACTR2-AS1 Gene

GeneHancer (GH) Regulatory Elements for PHACTR2-AS1 Gene

Promoters and enhancers for PHACTR2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I143568 Enhancer 0.4 ENCODE 550.8 +0.1 103 0.6 RFX1 MYNN BMI1 PHACTR2-AS1 PHACTR2 LTV1 ZC2HC1B ADAT2 GC06M143473
GH06I143960 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 18.1 -398.2 -398179 13.1 HDAC1 PKNOX1 FOXA2 ZFP64 SIN3A THRB ZBTB40 RARA TCF12 SCRT2 PLAGL1 PHACTR2-AS1 LTV1 PHACTR2 ZC2HC1B GC06P143999
GH06I144005 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 10.4 -438.1 -438081 3.2 HDGF PKNOX1 ATF1 ARNT EGR1 FOS CREM SMAD5 ZBTB11 IKZF1 PLAGL1 ENSG00000276680 HYMAI SF3B5 PHACTR2 PHACTR2-AS1 GC06P143999
GH06I143741 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.3 -176.4 -176411 9.5 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 FOS SP5 NFYC LTV1 ENSG00000270890 VDAC1P8 TUBB8P2 PHACTR2 ADAT2 PLAGL1 PHACTR2-AS1 ZC2HC1B GC06P143748
GH06I144035 Promoter/Enhancer 1 Ensembl ENCODE 10.8 -467.4 -467414 2.1 CTCF MAX CEBPG PRDM10 MYC RAD21 LOC100131041 PLAGL1 PHACTR2-AS1 LINC01277 GC06P144049
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PHACTR2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PHACTR2-AS1 Gene

Genomic Locations for PHACTR2-AS1 Gene
chr6:143,554,115-143,569,339
(GRCh38/hg38)
Size:
15,225 bases
Orientation:
Minus strand
chr6:143,875,462-143,890,476
(GRCh37/hg19)

Genomic View for PHACTR2-AS1 Gene

Genes around PHACTR2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PHACTR2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PHACTR2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PHACTR2-AS1 Gene

Proteins for PHACTR2-AS1 Gene

Post-translational modifications for PHACTR2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PHACTR2-AS1 Gene

Domains & Families for PHACTR2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PHACTR2-AS1 Gene

Function for PHACTR2-AS1 Gene

Phenotypes From GWAS Catalog for PHACTR2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PHACTR2-AS1 Gene

Localization for PHACTR2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PHACTR2-AS1 Gene

Pathways & Interactions for PHACTR2-AS1 Gene

SuperPathways for PHACTR2-AS1 Gene

No Data Available

Interacting Proteins for PHACTR2-AS1 Gene

Gene Ontology (GO) - Biological Process for PHACTR2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PHACTR2-AS1 Gene

Drugs & Compounds for PHACTR2-AS1 Gene

No Compound Related Data Available

Transcripts for PHACTR2-AS1 Gene

mRNA/cDNA for PHACTR2-AS1 Gene

(18) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PHACTR2-AS1 Gene

No ASD Table

Relevant External Links for PHACTR2-AS1 Gene

GeneLoc Exon Structure for
PHACTR2-AS1
ECgene alternative splicing isoforms for
PHACTR2-AS1

Expression for PHACTR2-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PHACTR2-AS1 Gene

Orthologs for PHACTR2-AS1 Gene

Evolution for PHACTR2-AS1 Gene

ENSEMBL:
Gene Tree for PHACTR2-AS1 (if available)
TreeFam:
Gene Tree for PHACTR2-AS1 (if available)

No data available for Orthologs for PHACTR2-AS1 Gene

Paralogs for PHACTR2-AS1 Gene

No data available for Paralogs for PHACTR2-AS1 Gene

Variants for PHACTR2-AS1 Gene

Sequence variations from dbSNP and Humsavar for PHACTR2-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000252973 -- 143,570,287(-) G/A upstream_transcript_variant
rs1000304109 -- 143,557,823(-) A/G intron_variant
rs1000909390 -- 143,559,167(-) A/G intron_variant
rs1001012430 -- 143,560,369(-) T/G intron_variant
rs1001105714 -- 143,566,756(-) T/G genic_upstream_transcript_variant, intron_variant

Additional Variant Information for PHACTR2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PHACTR2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PHACTR2-AS1 Gene

Disorders for PHACTR2-AS1 Gene

Additional Disease Information for PHACTR2-AS1

No disorders were found for PHACTR2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PHACTR2-AS1 Gene

Publications for PHACTR2-AS1 Gene

  1. Genome-wide association analyses identify variants in developmental genes associated with hypospadias. (PMID: 25108383) Geller F … Melbye M (Nature genetics 2014) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for PHACTR2-AS1 Gene

Sources for PHACTR2-AS1 Gene

Content
Loading form....