Aliases for PGM5-AS1 Gene

Subcategory (RNA class) for PGM5-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PGM5-AS1 Gene

  • PGM5 Antisense RNA 1 2 3 5
  • Family With Sequence Similarity 233, Member A 2 3
  • PGM5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PGM5-AS1 2 168
  • NONHSAG052494 92
  • HSALNG0071682 167
  • FAM233A 3

External Ids for PGM5-AS1 Gene

Previous GeneCards Identifiers for PGM5-AS1 Gene

  • GC09M070974

Summaries for PGM5-AS1 Gene

GeneCards Summary for PGM5-AS1 Gene

PGM5-AS1 (PGM5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PGM5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PGM5-AS1 Gene

Genomics for PGM5-AS1 Gene

GeneHancer (GH) Regulatory Elements for PGM5-AS1 Gene

Promoters and enhancers for PGM5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J068360 Enhancer 0.2 Ensembl 500.7 +0.8 774 0.2 PGM5-AS1 lnc-TMEM252-1 PGM5
GH09J068356 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 6.4 +3.3 3275 3.2 ZSCAN5C ZBTB10 ZBTB26 ZNF341 SIN3A KLF9 ZBTB17 KLF8 ZBTB48 ZNF335 PGM5 PGM5-AS1 ENSG00000226904 ANKRD20A1 lnc-TMEM252-1
GH09J068519 Enhancer 0.5 Ensembl 9.8 -158.8 -158826 0.6 ZNF623 ZNF426 ZNF34 ZC3H11A ZNF781 ZNF518A ZNF555 PRDM12 ZNF697 ZNF394 TMEM252 TMEM252-DT FAM122A ENSG00000233178 PGM5-AS1 HSALNG0071689 lnc-TMEM252-4 PGM5
GH09J068342 Enhancer 0.4 Ensembl 7.3 +18.1 18058 0.8 CTCF SMC3 RAD21 PGM5-AS1 LOC102723624 PGM5
GH09J068487 Enhancer 0.4 dbSUPER 5.1 -128.1 -128141 2.2 NR2F2 RXRA NFE2L2 TMEM252 TMEM252-DT PGM5-AS1 lnc-TMEM252-4 lnc-FOXD4L3-7 PGM5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PGM5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PGM5-AS1 Gene

Genomic Locations for PGM5-AS1 Gene
chr9:68,353,614-68,360,875
(GRCh38/hg38)
Size:
7,262 bases
Orientation:
Minus strand
chr9:70,970,105-70,972,768
(GRCh37/hg19)
Size:
2,664 bases
Orientation:
Minus strand

Genomic View for PGM5-AS1 Gene

Genes around PGM5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PGM5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PGM5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PGM5-AS1 Gene

Proteins for PGM5-AS1 Gene

Post-translational modifications for PGM5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PGM5-AS1 Gene

Domains & Families for PGM5-AS1 Gene

Gene Families for PGM5-AS1 Gene

genes like me logo Genes that share domains with PGM5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PGM5-AS1 Gene

Function for PGM5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PGM5-AS1 Gene

Localization for PGM5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PGM5-AS1 Gene

Pathways & Interactions for PGM5-AS1 Gene

PathCards logo

SuperPathways for PGM5-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PGM5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PGM5-AS1 Gene

Drugs & Compounds for PGM5-AS1 Gene

No Compound Related Data Available

Transcripts for PGM5-AS1 Gene

mRNA/cDNA for PGM5-AS1 Gene

14 RNACentral transcripts :
3 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PGM5-AS1 Gene

No ASD Table

Relevant External Links for PGM5-AS1 Gene

GeneLoc Exon Structure for
PGM5-AS1

Expression for PGM5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PGM5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PGM5-AS1 Gene

This gene is overexpressed in Bladder (x15.6), Colon - Sigmoid (x11.8), and Uterus (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PGM5-AS1

SOURCE GeneReport for Unigene cluster for PGM5-AS1 Gene:

Hs.9015
genes like me logo Genes that share expression patterns with PGM5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PGM5-AS1 Gene

Orthologs for PGM5-AS1 Gene

Evolution for PGM5-AS1 Gene

ENSEMBL:
Gene Tree for PGM5-AS1 (if available)
TreeFam:
Gene Tree for PGM5-AS1 (if available)

No data available for Orthologs for PGM5-AS1 Gene

Paralogs for PGM5-AS1 Gene

No data available for Paralogs for PGM5-AS1 Gene

Variants for PGM5-AS1 Gene

Additional dbSNP identifiers (rs#s) for PGM5-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PGM5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3620542 CNV loss 21293372
esv3620543 CNV gain 21293372
nsv1015629 CNV gain 25217958
nsv1026962 CNV gain 25217958
nsv1032290 CNV gain 25217958
nsv428218 CNV loss 18775914
nsv831609 CNV gain 17160897
nsv8519 CNV gain 18304495

Additional Variant Information for PGM5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PGM5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PGM5-AS1 Gene

Disorders for PGM5-AS1 Gene

Additional Disease Information for PGM5-AS1

No disorders were found for PGM5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PGM5-AS1 Gene

Publications for PGM5-AS1 Gene

  1. p53-induced long non-coding RNA PGM5-AS1 inhibits the progression of esophageal squamous cell carcinoma through regulating miR-466/PTEN axis. (PMID: 31185143) Zhihua Z … Jiang G (IUBMB life 2019) 2 3 54
  2. Identification of key lncRNAs in colorectal cancer progression based on associated protein-protein interaction analysis. (PMID: 28797257) Zhu H … Feng S (World journal of surgical oncology 2017) 2 3 54
  3. Long non-coding RNA LOC572558 inhibits bladder cancer cell proliferation and tumor growth by regulating the AKT-MDM2-p53 signaling axis. (PMID: 27130667) Zhu Y … Ye D (Cancer letters 2016) 2 3 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  5. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A … Ledbetter DH (Genomics 2004) 3 54

Products for PGM5-AS1 Gene

Sources for PGM5-AS1 Gene