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Aliases for PGK1P2 Gene

Aliases for PGK1P2 Gene

  • Phosphoglycerate Kinase 1, Pseudogene 2 2 3 5
  • Phosphoglycerate Kinase-2 (Testicular PGK) 3
  • PGK2 3

External Ids for PGK1P2 Gene

Previous GeneCards Identifiers for PGK1P2 Gene

  • GC19U990075
  • GC19P012515
  • GC19P012531
  • GC19P012671

Summaries for PGK1P2 Gene

GeneCards Summary for PGK1P2 Gene

PGK1P2 (Phosphoglycerate Kinase 1, Pseudogene 2) is a Pseudogene.

Additional gene information for PGK1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PGK1P2 Gene

Genomics for PGK1P2 Gene

GeneHancer (GH) Regulatory Elements for PGK1P2 Gene

Promoters and enhancers for PGK1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012549 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.8 -8.0 -8049 4.1 SP1 ZFX ELF3 ZNF148 NKRF POLR2A MLLT1 ZNF121 GTF2F1 CSDE1 ZNF564 LOC105372278 ENSG00000196826 ENSG00000230310 ZNF136 ZNF44 ZNF763 ZNF799 TRMT1 TRIR
GH19J012609 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 9.1 +52.7 52690 5.2 SP1 ZFX ELF3 MNT SIX5 NKRF POLR2A MLLT1 CEBPG RERE ZNF490 ZNF791 PIR37932 ZNF136 ZNF44 ZNF442 ZNF844 ZNF20 ZNF564 ZNF700
GH19J012543 Enhancer 1.1 Ensembl ENCODE 14.2 -14.6 -14636 2.7 CC2D1A CBFA2T2 MLLT1 MAFK TRIM24 SP1 ZNF639 EGR1 SMARCA4 MTA1 PGK1P2 ZNF564 ENSG00000196826 ENSG00000269560 ENSG00000269693
GH19J012597 Promoter/Enhancer 1.1 Ensembl ENCODE 11.3 +38.0 37985 0.9 SP1 RXRA MAFK YY1 GABPA HNF4A MAX ZBTB33 REST HNF4G PGK1P2 GC19M012576 VN2R16P ZNF490
GH19J012647 Promoter/Enhancer 1.1 Ensembl ENCODE 6.9 +88.6 88616 1.8 EGR1 REST PKNOX1 CTCF NRF1 KLF9 HDGF KLF8 ZNF664 ZBTB33 ENSG00000269242 PGK1P2 TNPO2 RPL10P16 MAN2B1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PGK1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PGK1P2 Gene

Genomic Locations for PGK1P2 Gene
chr19:12,559,485-12,561,278
(GRCh38/hg38)
Size:
1,794 bases
Orientation:
Plus strand
chr19:12,670,299-12,672,090
(GRCh37/hg19)
Size:
1,792 bases
Orientation:
Plus strand

Genomic View for PGK1P2 Gene

Genes around PGK1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PGK1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PGK1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PGK1P2 Gene

Proteins for PGK1P2 Gene

Post-translational modifications for PGK1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PGK1P2 Gene

Domains & Families for PGK1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PGK1P2 Gene

Function for PGK1P2 Gene

Molecular function for PGK1P2 Gene

GENATLAS Biochemistry:
phosphoglycerate kinase 1,pseudogene 2

Phenotypes From GWAS Catalog for PGK1P2 Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PGK1P2 Gene

Localization for PGK1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PGK1P2 Gene

Pathways & Interactions for PGK1P2 Gene

PathCards logo

SuperPathways for PGK1P2 Gene

No Data Available

Interacting Proteins for PGK1P2 Gene

Gene Ontology (GO) - Biological Process for PGK1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PGK1P2 Gene

Drugs & Compounds for PGK1P2 Gene

No Compound Related Data Available

Transcripts for PGK1P2 Gene

mRNA/cDNA for PGK1P2 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PGK1P2 Gene

No ASD Table

Relevant External Links for PGK1P2 Gene

GeneLoc Exon Structure for
PGK1P2
ECgene alternative splicing isoforms for
PGK1P2

Expression for PGK1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PGK1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of PGK1P2 Gene:

PGK1P2
genes like me logo Genes that share expression patterns with PGK1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PGK1P2 Gene

Orthologs for PGK1P2 Gene

Evolution for PGK1P2 Gene

ENSEMBL:
Gene Tree for PGK1P2 (if available)
TreeFam:
Gene Tree for PGK1P2 (if available)

No data available for Orthologs for PGK1P2 Gene

Paralogs for PGK1P2 Gene

No data available for Paralogs for PGK1P2 Gene

Variants for PGK1P2 Gene

Additional Variant Information for PGK1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PGK1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PGK1P2 Gene

Disorders for PGK1P2 Gene

No disorders were found for PGK1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PGK1P2 Gene

Publications for PGK1P2 Gene

  1. Mapping of human autosomal phosphoglycerate kinase sequence to chromosome 19. (PMID: 3016919) Gartler SM … Shows TB (Somatic cell and molecular genetics 1986) 2 3 58
  2. Toward early diagnosis of myotonic dystrophy: construction and characterization of a somatic cell hybrid with a single human der(19) chromosome. (PMID: 3502690) Hulsebos T … Ropers HH (Cytogenetics and cell genetics 1986) 2 3 58
  3. Analysis of the cDNA and encoded protein of the human testis-specific PGK-2 gene. (PMID: 9023984) McCarrey JR … Vandeberg JL (Developmental genetics 1996) 23 58
  4. Cloning and characterization of two 3-phosphoglycerate kinase genes of Rhizopus niveus and heterologous gene expression using their promoters. (PMID: 8082204) Takaya N … Takagi M (Current genetics 1994) 23 58
  5. A single nucleotide substitution in the phosphoglycerate kinase (PGK)-1 gene occurred after the separation of PGK-1 and PGK-2. (PMID: 1634238) Fujii H … Miwa S (Human genetics 1992) 23 58

Products for PGK1P2 Gene

Sources for PGK1P2 Gene

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