Aliases for PGDP2 Gene

Aliases for PGDP2 Gene

  • Phosphogluconate Dehydrogenase Pseudogene 2 2 3

External Ids for PGDP2 Gene

Previous GeneCards Identifiers for PGDP2 Gene

  • GC12P075994

Summaries for PGDP2 Gene

GeneCards Summary for PGDP2 Gene

PGDP2 (Phosphogluconate Dehydrogenase Pseudogene 2) is a Pseudogene.

Additional gene information for PGDP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PGDP2 Gene

Genomics for PGDP2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PGDP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J075592 Enhancer 0.6 FANTOM5 dbSUPER 0.4 -7.0 -6988 0.3 TBX3 BHLHE40 TCF7 ENSG00000251893 PHLDA1 piR-60146-028 PGDP2 KRR1 ENSG00000258077 LOC105369844
GH12J075589 Enhancer 0.5 FANTOM5 dbSUPER 0.4 -10.6 -10609 0 REST piR-60146-028 ENSG00000251893 PHLDA1 PGDP2 KRR1 ENSG00000258077 LOC105369844
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PGDP2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PGDP2 Gene

Latest Assembly
chr12:75,599,999-75,601,719
(GRCh38/hg38)
Size:
1,721 bases
Orientation:
Plus strand

Previous Assembly
chr12:75,993,779-75,995,499
(GRCh37/hg19 by Entrez Gene)
Size:
1,721 bases
Orientation:
Plus strand

Genomic View for PGDP2 Gene

Genes around PGDP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PGDP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PGDP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PGDP2 Gene

Proteins for PGDP2 Gene

Post-translational modifications for PGDP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PGDP2 Gene

Domains & Families for PGDP2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PGDP2 Gene

Function for PGDP2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PGDP2 Gene

Localization for PGDP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PGDP2 Gene

Pathways & Interactions for PGDP2 Gene

PathCards logo

SuperPathways for PGDP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PGDP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PGDP2 Gene

Drugs & Compounds for PGDP2 Gene

No Compound Related Data Available

Transcripts for PGDP2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PGDP2 Gene

No ASD Table

Relevant External Links for PGDP2 Gene

GeneLoc Exon Structure for
PGDP2

No data available for mRNA/cDNA for PGDP2 Gene

Expression for PGDP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PGDP2 Gene

genes like me logo Genes that share expression patterns with PGDP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PGDP2 Gene

Orthologs for PGDP2 Gene

No data available for Orthologs and Evolution for PGDP2 Gene

Paralogs for PGDP2 Gene

No data available for Paralogs for PGDP2 Gene

Variants for PGDP2 Gene

Additional Variant Information for PGDP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PGDP2
Leiden Open Variation Database (LOVD)
PGDP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PGDP2 Gene

Disorders for PGDP2 Gene

No disorders were found for PGDP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PGDP2 Gene

Publications for PGDP2 Gene

No publications were found for PGDP2 Gene.

No data available for Mastermind for PGDP2 Gene

Products for PGDP2 Gene

Sources for PGDP2 Gene