PGDP1 Gene (Pseudogene)

Phosphogluconate Dehydrogenase Pseudogene 1

GC18P031962
GIFtS:
8
See more...

Aliases for PGDP1 Gene

Aliases for PGDP1 Gene

  • Phosphogluconate Dehydrogenase Pseudogene 1 2 3 5
  • Phosphogluconate Dehydrogenase-Like 1 2 3
  • PGDL1 3
  • PGDP1 5

External Ids for PGDP1 Gene

Previous HGNC Symbols for PGDP1 Gene

  • PGDL1

Previous GeneCards Identifiers for PGDP1 Gene

  • GC18P029543

Summaries for PGDP1 Gene

GeneCards Summary for PGDP1 Gene

PGDP1 (Phosphogluconate Dehydrogenase Pseudogene 1) is a Pseudogene.

Additional gene information for PGDP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PGDP1 Gene

Genomics for PGDP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PGDP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J031962 Enhancer 0.5 FANTOM5 250.7 +0.6 627 0.5 JUND ATF2 ATF7 PGDP1 piR-46662-300 piR-31162-216 piR-49732-259 piR-55650-300 RNF138 piR-50219-006 TRAPPC8 RF00017-2651 RNF125
GH18J031965 Enhancer 0.5 Ensembl ENCODE 0.7 +3.5 3499 0.7 SPI1 MEIS2 LOC100287539 piR-50219-006 PGDP1 TRAPPC8 RF00017-2651 RNF125 RF00017-2648
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PGDP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PGDP1 Gene

Latest Assembly
chr18:31,962,129-31,963,716
(GRCh38/hg38)
Size:
1,588 bases
Orientation:
Plus strand

Previous Assembly
chr18:29,542,092-29,543,679
(GRCh37/hg19 by Entrez Gene)
Size:
1,588 bases
Orientation:
Plus strand

chr18:29,542,141-29,543,581
(GRCh37/hg19 by Ensembl)
Size:
1,441 bases
Orientation:
Plus strand

Genomic View for PGDP1 Gene

Genes around PGDP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PGDP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PGDP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PGDP1 Gene

Proteins for PGDP1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for PGDP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PGDP1 Gene

Domains & Families for PGDP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PGDP1 Gene

Function for PGDP1 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for PGDP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PGDP1 Gene

Localization for PGDP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PGDP1 Gene

Pathways & Interactions for PGDP1 Gene

PathCards logo

SuperPathways for PGDP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PGDP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PGDP1 Gene

Drugs & Compounds for PGDP1 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for PGDP1 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for PGDP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PGDP1 Gene

No ASD Table

Relevant External Links for PGDP1 Gene

GeneLoc Exon Structure for
PGDP1

Expression for PGDP1 Gene

Products:

  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PGDP1 Gene

mRNA expression in normal human tissues for PGDP1 Gene
mRNA expression by GTEx for PGDP1 Gene

mRNA differential expression in normal tissues according to GTEx for PGDP1 Gene

This gene is overexpressed in Testis (x43.8), Cervix - Ectocervix (x4.7), and Cervix - Endocervix (x4.5).
genes like me logo Genes that share expression patterns with PGDP1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PGDP1 Gene

Orthologs for PGDP1 Gene

Evolution for PGDP1 Gene

ENSEMBL:
Gene Tree for PGDP1 (if available)
TreeFam:
Gene Tree for PGDP1 (if available)

No data available for Orthologs for PGDP1 Gene

Paralogs for PGDP1 Gene

No data available for Paralogs for PGDP1 Gene

Variants for PGDP1 Gene

Additional Variant Information for PGDP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PGDP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PGDP1 Gene

Disorders for PGDP1 Gene

No disorders were found for PGDP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PGDP1 Gene

Publications for PGDP1 Gene

No publications were found for PGDP1 Gene.

ExternalLinks

View latest publications for PGDP1 gene in Mastermind

Products for PGDP1 Gene

Sources for PGDP1 Gene