Aliases for PGBP Gene

Aliases for PGBP Gene

  • Pepsinogen B, Pseudogene 2 3 5
  • Progastricsin (Pepsinogen C) Pseudogene 1 2 3
  • Progastricsin Pseudogene 1 2 3
  • PGCP1 3
  • PGBP 5

External Ids for PGBP Gene

Previous HGNC Symbols for PGBP Gene

  • PGCP1

Summaries for PGBP Gene

GeneCards Summary for PGBP Gene

PGBP (Pepsinogen B, Pseudogene) is a Pseudogene.

Additional gene information for PGBP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PGBP Gene

Genomics for PGBP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PGBP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J111392 Enhancer 0.3 Ensembl 600.7 -0.8 -782 0.8 SPI1 PGBP piR-48222-018 OVGP1 PIFO
GH01J111469 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -82.4 -82402 8.7 SP1 LEF1 BACH1 STAT3 RELA PKNOX1 ZNF24 IKZF2 POLR2A TRIM22 C1orf162 NONHSAG002411.2 INKA2 ENSG00000260948 RAP1A OVGP1 WDR77 ATP5PB RNU6-151P KRT18P57
GH01J111385 Enhancer 0.2 Ensembl 0.4 +6.4 6418 0.4 PGBP lnc-PIFO-2 OVGP1 PIFO
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PGBP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PGBP Gene

Genomic Locations for PGBP Gene
chr1:111,382,860-111,391,819
(GRCh38/hg38)
Size:
8,960 bases
Orientation:
Minus strand
chr1:111,925,482-111,934,441
(GRCh37/hg19)
Size:
8,960 bases
Orientation:
Minus strand

Genomic View for PGBP Gene

Genes around PGBP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PGBP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PGBP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PGBP Gene

Proteins for PGBP Gene

No data available for DME Specific Peptides for PGBP Gene

Domains & Families for PGBP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PGBP Gene

Function for PGBP Gene

Phenotypes From GWAS Catalog for PGBP Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PGBP Gene

Localization for PGBP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PGBP Gene

Pathways & Interactions for PGBP Gene

PathCards logo

SuperPathways for PGBP Gene

No Data Available

Gene Ontology (GO) - Biological Process for PGBP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PGBP Gene

Drugs & Compounds for PGBP Gene

No Compound Related Data Available

Transcripts for PGBP Gene

mRNA/cDNA for PGBP Gene

2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PGBP Gene

No ASD Table

Relevant External Links for PGBP Gene

GeneLoc Exon Structure for
PGBP

Expression for PGBP Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PGBP

SOURCE GeneReport for Unigene cluster for PGBP Gene:

Hs.568387
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PGBP Gene

Orthologs for PGBP Gene

Evolution for PGBP Gene

ENSEMBL:
Gene Tree for PGBP (if available)
TreeFam:
Gene Tree for PGBP (if available)

No data available for Orthologs for PGBP Gene

Paralogs for PGBP Gene

No data available for Paralogs for PGBP Gene

Variants for PGBP Gene

Structural Variations from Database of Genomic Variants (DGV) for PGBP Gene

Variant ID Type Subtype PubMed ID
dgv509n54 CNV loss 21841781
dgv510n54 CNV loss 21841781
dgv511n54 CNV loss 21841781
dgv512n54 CNV loss 21841781
esv24395 CNV loss 19812545
esv2666362 CNV deletion 23128226
esv3567559 CNV deletion 23714750
esv3578104 CNV loss 25503493
esv3578106 CNV loss 25503493
esv3578107 CNV loss 25503493
esv3587183 CNV loss 21293372
nsv441710 CNV loss 18776908
nsv463250 CNV loss 19166990
nsv508504 CNV deletion 20534489
nsv516329 CNV loss 19592680
nsv523120 CNV loss 19592680
nsv547535 CNV loss 21841781
nsv818367 CNV loss 17921354

Additional Variant Information for PGBP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PGBP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for PGBP Gene

Disorders for PGBP Gene

Additional Disease Information for PGBP

No disorders were found for PGBP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PGBP Gene

Publications for PGBP Gene

  1. The evolution of pepsinogen C genes in vertebrates: duplication, loss and functional diversification. (PMID: 22427897) Castro LF … Wilson JM (PloS one 2012) 2 3

Products for PGBP Gene

Sources for PGBP Gene