Aliases for PGBD3P2 Gene

Aliases for PGBD3P2 Gene

  • PiggyBac Transposable Element Derived 3 Pseudogene 2 2 3
  • PiggyBac Transposable Element Derived 3 (PGBD3) Pseudogene 5
  • AC010374.1 5

External Ids for PGBD3P2 Gene

Previous GeneCards Identifiers for PGBD3P2 Gene

  • GC05U900016
  • GC05M029927
  • GC05M029917
  • GC05M029883

Summaries for PGBD3P2 Gene

GeneCards Summary for PGBD3P2 Gene

PGBD3P2 (PiggyBac Transposable Element Derived 3 Pseudogene 2) is a Pseudogene.

Additional gene information for PGBD3P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PGBD3P2 Gene

Genomics for PGBD3P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PGBD3P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J029795 Enhancer 0.8 Ensembl ENCODE 7.5 +87.9 87911 0.9 IKZF1 ZNF592 EP300 ZNF316 NFE2 NFE2L2 MAFG MAFF ZNF518A MAFK ENSG00000250984 HSALNG0040884 LOC105374703 lnc-CDH6-8 PGBD3P2
GH05J029796 Enhancer 1.1 FANTOM5 Ensembl ENCODE 4.2 +86.8 86752 1.2 NCOR1 IKZF1 NFIC MBD2 TAL1 ZNF316 NFE2 STAT5A IRF9 FOXM1 ENSG00000250984 lnc-CDH6-8 PGBD3P2 HSALNG0040884 LOC105374703 piR-30853-055
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PGBD3P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PGBD3P2 Gene

Latest Assembly
chr5:29,881,699-29,882,953
(GRCh38/hg38)
Size:
1,255 bases
Orientation:
Minus strand

Previous Assembly
chr5:29,881,806-29,883,060
(GRCh37/hg19 by Entrez Gene)
Size:
1,255 bases
Orientation:
Minus strand

chr5:29,881,816-29,883,052
(GRCh37/hg19 by Ensembl)
Size:
1,237 bases
Orientation:
Minus strand

Genomic View for PGBD3P2 Gene

Genes around PGBD3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PGBD3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PGBD3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PGBD3P2 Gene

Proteins for PGBD3P2 Gene

Post-translational modifications for PGBD3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PGBD3P2 Gene

Domains & Families for PGBD3P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PGBD3P2 Gene

Function for PGBD3P2 Gene

Phenotypes From GWAS Catalog for PGBD3P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PGBD3P2 Gene

Localization for PGBD3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PGBD3P2 Gene

Pathways & Interactions for PGBD3P2 Gene

PathCards logo

SuperPathways for PGBD3P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PGBD3P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PGBD3P2 Gene

Drugs & Compounds for PGBD3P2 Gene

No Compound Related Data Available

Transcripts for PGBD3P2 Gene

mRNA/cDNA for PGBD3P2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PGBD3P2 Gene

No ASD Table

Relevant External Links for PGBD3P2 Gene

GeneLoc Exon Structure for
PGBD3P2

Expression for PGBD3P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PGBD3P2 Gene

mRNA differential expression in normal tissues according to GTEx for PGBD3P2 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with PGBD3P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PGBD3P2 Gene

Orthologs for PGBD3P2 Gene

Evolution for PGBD3P2 Gene

ENSEMBL:
Gene Tree for PGBD3P2 (if available)
TreeFam:
Gene Tree for PGBD3P2 (if available)
Alliance of Genome Resources:
Additional Orthologs for PGBD3P2

No data available for Orthologs for PGBD3P2 Gene

Paralogs for PGBD3P2 Gene

No data available for Paralogs for PGBD3P2 Gene

Variants for PGBD3P2 Gene

Additional Variant Information for PGBD3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PGBD3P2
Leiden Open Variation Database (LOVD)
PGBD3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PGBD3P2 Gene

Disorders for PGBD3P2 Gene

No disorders were found for PGBD3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PGBD3P2 Gene

Publications for PGBD3P2 Gene

  1. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PMID: 17903295) Lunetta KL … Murabito JM (BMC medical genetics 2007) 40
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 40

Products for PGBD3P2 Gene

Sources for PGBD3P2 Gene