Aliases for PGAM1P4 Gene

Aliases for PGAM1P4 Gene

  • Phosphoglycerate Mutase 1 Pseudogene 4 2 3 5
  • PGAM1P4 5

External Ids for PGAM1P4 Gene

Previous GeneCards Identifiers for PGAM1P4 Gene

  • GC03P009395
  • GC03P009397
  • GC03P009398
  • GC03P009399
  • GC03P009400
  • GC03P009401

Summaries for PGAM1P4 Gene

GeneCards Summary for PGAM1P4 Gene

PGAM1P4 (Phosphoglycerate Mutase 1 Pseudogene 4) is a Pseudogene.

Additional gene information for PGAM1P4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PGAM1P4 Gene

Genomics for PGAM1P4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PGAM1P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J009346 Enhancer 0.6 ENCODE 600.7 +0.4 430 3.7 FOXA1 NR2C1 CEBPB FOXA2 ZNF217 GATA3 DPF2 NFIB HNF4A RXRA PGAM1P4 THUMPD3-AS1 SRGAP3 THUMPD3 ENSG00000254485 lnc-LHFPL4-6 RAD18
GH03J009351 Enhancer 1.1 ENCODE CraniofacialAtlas 0.7 +4.5 4451 3.5 GATAD2A CTCF TEAD4 PRDM10 REST TFE3 RFX1 SOX13 ZHX2 FOXA1 THUMPD3-AS1 SRGAP3 THUMPD3 PGAM1P4 lnc-LHFPL4-6 ENSG00000254485 RAD18
GH03J009339 Enhancer 0.8 Ensembl ENCODE 0.4 -7.6 -7593 3.2 IKZF1 JUND ZIC2 PKNOX1 POLR2A NFE2 FOS FOSL1 CUX1 FOSL2 SRGAP3 THUMPD3 ENSG00000254485 THUMPD3-AS1 RAD18 MTMR14 ENSG00000199815 ARPC4 ARPC4-TTLL3 TADA3
GH03J009342 Enhancer 0.3 Ensembl ENCODE 0.4 -5.5 -5465 0.9 SRGAP3 THUMPD3-AS1 PGAM1P4 THUMPD3 ENSG00000254485 piR-39701-032 RAD18
GH03J009345 Enhancer 0.2 Ensembl 0.7 -2.8 -2793 0.4 PGAM1P4 ENSG00000254485 SRGAP3 THUMPD3 piR-39701-032 RAD18
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PGAM1P4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PGAM1P4 Gene

Genomic Locations for PGAM1P4 Gene
chr3:9,348,394-9,349,389
(GRCh38/hg38)
Size:
996 bases
Orientation:
Plus strand
chr3:9,390,071-9,390,952
(GRCh37/hg19)
Size:
882 bases
Orientation:
Plus strand

Genomic View for PGAM1P4 Gene

Genes around PGAM1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PGAM1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PGAM1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PGAM1P4 Gene

Proteins for PGAM1P4 Gene

Post-translational modifications for PGAM1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PGAM1P4 Gene

Domains & Families for PGAM1P4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PGAM1P4 Gene

Function for PGAM1P4 Gene

Phenotypes for PGAM1P4 Gene

genes like me logo Genes that share phenotypes with PGAM1P4: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PGAM1P4 Gene

Localization for PGAM1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PGAM1P4 Gene

Pathways & Interactions for PGAM1P4 Gene

PathCards logo

SuperPathways for PGAM1P4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PGAM1P4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PGAM1P4 Gene

Drugs & Compounds for PGAM1P4 Gene

No Compound Related Data Available

Transcripts for PGAM1P4 Gene

mRNA/cDNA for PGAM1P4 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PGAM1P4 Gene

No ASD Table

Relevant External Links for PGAM1P4 Gene

GeneLoc Exon Structure for
PGAM1P4

Expression for PGAM1P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PGAM1P4 Gene

mRNA differential expression in normal tissues according to GTEx for PGAM1P4 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x12.3), Brain - Hippocampus (x7.5), and Brain - Cortex (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PGAM1P4

genes like me logo Genes that share expression patterns with PGAM1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PGAM1P4 Gene

Orthologs for PGAM1P4 Gene

Evolution for PGAM1P4 Gene

ENSEMBL:
Gene Tree for PGAM1P4 (if available)
TreeFam:
Gene Tree for PGAM1P4 (if available)

No data available for Orthologs for PGAM1P4 Gene

Paralogs for PGAM1P4 Gene

No data available for Paralogs for PGAM1P4 Gene

Variants for PGAM1P4 Gene

Additional Variant Information for PGAM1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PGAM1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PGAM1P4 Gene

Disorders for PGAM1P4 Gene

Additional Disease Information for PGAM1P4

No disorders were found for PGAM1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PGAM1P4 Gene

Publications for PGAM1P4 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for PGAM1P4 Gene

Products for PGAM1P4 Gene

Sources for PGAM1P4 Gene