Aliases for PEX5L-AS1 Gene

Subcategory (RNA class) for PEX5L-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for PEX5L-AS1 Gene

  • PEX5L Antisense RNA 1 2 3 5
  • PEX5L Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG036761 92
  • HSALNG0030989 167
  • PEX5L-AS1 2

External Ids for PEX5L-AS1 Gene

Previous GeneCards Identifiers for PEX5L-AS1 Gene

  • GC00U933151
  • GC03P179594
  • GC03P179899

Summaries for PEX5L-AS1 Gene

GeneCards Summary for PEX5L-AS1 Gene

PEX5L-AS1 (PEX5L Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PEX5L-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PEX5L-AS1 Gene

Genomics for PEX5L-AS1 Gene

GeneHancer (GH) Regulatory Elements for PEX5L-AS1 Gene

Promoters and enhancers for PEX5L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J179942 Promoter/Enhancer 1.1 FANTOM5 CraniofacialAtlas dbSUPER 10.2 +66.9 66889 0.5 NRF1 ZBTB26 RFX1 MXI1 ZNF341 CTCF ZFHX2 MAZ HIC1 EGR1 PEX5L-AS1 PEX5L ENSG00000287645 PEX5L-AS2 lnc-MRPL47-6
GH03J179955 Enhancer 1.1 Ensembl ENCODE dbSUPER 9.9 +81.9 81863 2.7 SP1 EP300 RELA MEF2C RCOR1 TRIM22 EZH2 BCL11A TCF12 CBFB PEX5L-AS1 PEX5L ENSG00000287645 PEX5L-AS2 lnc-MRPL47-6
GH03J179852 Enhancer 0.8 Ensembl ENCODE 12.3 -22.8 -22776 3.2 FOS MEF2C CTCF CBFB MEF2B SPI1 ZNF513 BATF POU2F2 EBF1 PEX5L-AS1 ENSG00000270178 PEX5L
GH03J179960 Enhancer 0.7 dbSUPER 9.9 +86.3 86253 5.2 EP300 MEF2C TRIM22 TCF12 SRF ARNT MEF2B NBN GATA3 FOXA1 PEX5L PEX5L-AS1 USP13 ENSG00000287645 PEX5L-AS2 lnc-MRPL47-6
GH03J179967 Enhancer 0.7 Ensembl dbSUPER 9.6 +92.5 92524 0.6 SP1 ARNT MEF2B POU2F2 EBF1 ATF2 BHLHE40 MTA2 ARID3A MLLT1 USP13 PEX5L-AS1 ENSG00000287645 PEX5L lnc-MRPL47-6 PEX5L-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PEX5L-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PEX5L-AS1 Gene

Genomic Locations for PEX5L-AS1 Gene
chr3:179,875,376-179,881,610
(GRCh38/hg38)
Size:
6,235 bases
Orientation:
Plus strand
chr3:179,593,164-179,599,397
(GRCh37/hg19)
Size:
6,234 bases
Orientation:
Plus strand

Genomic View for PEX5L-AS1 Gene

Genes around PEX5L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PEX5L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PEX5L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for PEX5L-AS1 Gene

Proteins for PEX5L-AS1 Gene

Post-translational modifications for PEX5L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PEX5L-AS1 Gene

Domains & Families for PEX5L-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PEX5L-AS1 Gene

Function for PEX5L-AS1 Gene

Phenotypes From GWAS Catalog for PEX5L-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PEX5L-AS1 Gene

Localization for PEX5L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PEX5L-AS1 Gene

Pathways & Interactions for PEX5L-AS1 Gene

PathCards logo

SuperPathways for PEX5L-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PEX5L-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PEX5L-AS1 Gene

Drugs & Compounds for PEX5L-AS1 Gene

No Compound Related Data Available

Transcripts for PEX5L-AS1 Gene

mRNA/cDNA for PEX5L-AS1 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PEX5L-AS1 Gene

No ASD Table

Relevant External Links for PEX5L-AS1 Gene

GeneLoc Exon Structure for
PEX5L-AS1

Expression for PEX5L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PEX5L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PEX5L-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x9.4), Brain - Substantia nigra (x6.3), Brain - Hippocampus (x4.3), and Brain - Cortex (x4.1).
genes like me logo Genes that share expression patterns with PEX5L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PEX5L-AS1 Gene

Orthologs for PEX5L-AS1 Gene

Evolution for PEX5L-AS1 Gene

ENSEMBL:
Gene Tree for PEX5L-AS1 (if available)
TreeFam:
Gene Tree for PEX5L-AS1 (if available)

No data available for Orthologs for PEX5L-AS1 Gene

Paralogs for PEX5L-AS1 Gene

No data available for Paralogs for PEX5L-AS1 Gene

Variants for PEX5L-AS1 Gene

Additional Variant Information for PEX5L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PEX5L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PEX5L-AS1 Gene

Disorders for PEX5L-AS1 Gene

No disorders were found for PEX5L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PEX5L-AS1 Gene

Publications for PEX5L-AS1 Gene

No publications were found for PEX5L-AS1 Gene.

Products for PEX5L-AS1 Gene

Sources for PEX5L-AS1 Gene