This gene is located in the paternally expressed gene 3 (PEG3) imprinted region on chromosome 19. The corresponding transcript in mouse is imprinted and regulates expression of the mouse Peg3 gene. [provided by RefSeq, Sep 2016] See more...

Aliases for PEG3-AS1 Gene

Subcategory (RNA class) for PEG3-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for PEG3-AS1 Gene

  • PEG3 Antisense RNA 1 2 3
  • PEG3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PEG3 Antisense RNA (Non-Protein Coding) 2
  • Antisense Transcript Gene Of PEG3 3
  • Non-Protein Coding RNA 155 2
  • Antisense PEG3 Transcript 2
  • NONHSAG026648 92
  • HSALNG0127790 167
  • NCRNA00155 3
  • PEG3-AS1 2
  • PEG3-AS 3
  • PEG3AS 3
  • APEG3 3

External Ids for PEG3-AS1 Gene

Previous HGNC Symbols for PEG3-AS1 Gene

  • PEG3AS
  • PEG3-AS

Previous GeneCards Identifiers for PEG3-AS1 Gene

  • GC19P057323

Summaries for PEG3-AS1 Gene

Entrez Gene Summary for PEG3-AS1 Gene

  • This gene is located in the paternally expressed gene 3 (PEG3) imprinted region on chromosome 19. The corresponding transcript in mouse is imprinted and regulates expression of the mouse Peg3 gene. [provided by RefSeq, Sep 2016]

GeneCards Summary for PEG3-AS1 Gene

PEG3-AS1 (PEG3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PEG3-AS1 include Squamous Cell Papilloma.

Additional gene information for PEG3-AS1 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PEG3-AS1 Gene

Genomics for PEG3-AS1 Gene

GeneHancer (GH) Regulatory Elements for PEG3-AS1 Gene

Promoters and enhancers for PEG3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J056812 Promoter 0.6 EPDnew 0.7 +2.4 2427 0.1 RBM22 FOSL2 POLR2A lnc-ZNF835-4 PEG3 PEG3-AS1 piR-42229 ZIM2 ENSG00000286125
GH19J056813 Promoter 0.5 EPDnew 0.7 +2.7 2728 0.1 RBM22 POLR2A PEG3 lnc-ZNF835-4 ZIM2 PEG3-AS1 piR-42229 ENSG00000286125
GH19J056814 Promoter 0.5 EPDnew 0.7 +4.3 4267 0.1 POLR2G RBM22 PEG3 piR-42229 ZIM2 ZIM3 PEG3-AS1 lnc-ZNF835-4 ENSG00000286125
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PEG3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PEG3-AS1 Gene

Genomic Locations for PEG3-AS1 Gene
chr19:56,810,109-56,816,102
(GRCh38/hg38)
Size:
5,994 bases
Orientation:
Plus strand
chr19:57,323,848-57,325,161
(GRCh37/hg19)
Size:
1,314 bases
Orientation:
Plus strand

Genomic View for PEG3-AS1 Gene

Genes around PEG3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PEG3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PEG3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PEG3-AS1 Gene

Proteins for PEG3-AS1 Gene

Post-translational modifications for PEG3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PEG3-AS1 Gene

Domains & Families for PEG3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PEG3-AS1 Gene

Function for PEG3-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PEG3-AS1 Gene

Localization for PEG3-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PEG3-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PEG3-AS1 Gene

Pathways & Interactions for PEG3-AS1 Gene

PathCards logo

SuperPathways for PEG3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PEG3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PEG3-AS1 Gene

Drugs & Compounds for PEG3-AS1 Gene

No Compound Related Data Available

Transcripts for PEG3-AS1 Gene

mRNA/cDNA for PEG3-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NONCODE transcripts :
1 LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PEG3-AS1 Gene

No ASD Table

Relevant External Links for PEG3-AS1 Gene

GeneLoc Exon Structure for
PEG3-AS1

Expression for PEG3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PEG3-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PEG3-AS1 Gene

Orthologs for PEG3-AS1 Gene

No data available for Orthologs and Evolution for PEG3-AS1 Gene

Paralogs for PEG3-AS1 Gene

No data available for Paralogs for PEG3-AS1 Gene

Variants for PEG3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PEG3-AS1 Gene

SNP ID Clinical significance and condition Chr 19 pos Variation AA Info Type
716613 Benign: not provided 56,813,741(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for PEG3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PEG3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv478290 CNV novel sequence insertion 20440878
nsv833884 CNV loss 17160897

Additional Variant Information for PEG3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PEG3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PEG3-AS1 Gene

Disorders for PEG3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PEG3-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
squamous cell papilloma
  • epidermoid papilloma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PEG3-AS1

genes like me logo Genes that share disorders with PEG3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PEG3-AS1 Gene

Publications for PEG3-AS1 Gene

  1. APeg3: regulation of Peg3 through an evolutionarily conserved ncRNA. (PMID: 24582979) Frey WD … Kim J (Gene 2014) 2 3 54
  2. Imprinting of an evolutionarily conserved antisense transcript gene APeg3. (PMID: 18166281) Choo JH … Kim J (Gene 2008) 2 3 54
  3. APeg3, a novel paternally expressed gene 3 antisense RNA transcript specifically expressed in vasopressinergic magnocellular neurons in the rat supraoptic nucleus. (PMID: 15950772) Glasgow E … Gainer H (Brain research. Molecular brain research 2005) 2 3 54
  4. Regulation and function of the peg3 imprinted domain. (PMID: 25317109) He H … Kim J (Genomics & informatics 2014) 3 54

Products for PEG3-AS1 Gene

Sources for PEG3-AS1 Gene