PEBP1 Gene (Protein Coding)

Phosphatidylethanolamine Binding Protein 1

GC12P118135
GIFtS:
45
This gene encodes a member of the phosphatidylethanolamine-binding family of proteins and has been shown to modulate multiple signaling pathways, including the MAP kinase (MAPK), NF-kappa B, and glycogen synthase kinase-3 (GSK-3) signaling pathways. The encoded protein can be further processed to form a smaller cleavage product, hippocampal cholinergic neurostimulating peptide ... See more...

Aliases for PEBP1 Gene

Aliases for PEBP1 Gene

  • Phosphatidylethanolamine Binding Protein 1 2 3 5
  • PEBP 2 3 4
  • RKIP 2 3 4
  • Hippocampal Cholinergic Neurostimulating Peptide 2 3
  • Phosphatidylethanolamine-Binding Protein 1 3 4
  • Raf Kinase Inhibitory Protein 2 3
  • Raf Kinase Inhibitor Protein 3 4
  • Prostatic Binding Protein 2 3
  • Neuropolypeptide H3 3 4
  • HCNPpp 3 4
  • PEBP-1 3 4
  • HCNP 2 3
  • PBP 3 4
  • Epididymis Secretory Protein Li 34 3
  • Epididymis Secretory Protein Li 96 3
  • Epididymis Luminal Protein 210 3
  • Prostatic-Binding Protein 4
  • HEL-S-34 3
  • HEL-S-96 3
  • HEL-210 3
  • PEBP1 5

External Ids for PEBP1 Gene

Previous HGNC Symbols for PEBP1 Gene

  • PBP

Previous GeneCards Identifiers for PEBP1 Gene

  • GC12P117058
  • GC12P118573
  • GC12P115583

Summaries for PEBP1 Gene

Entrez Gene Summary for PEBP1 Gene

  • This gene encodes a member of the phosphatidylethanolamine-binding family of proteins and has been shown to modulate multiple signaling pathways, including the MAP kinase (MAPK), NF-kappa B, and glycogen synthase kinase-3 (GSK-3) signaling pathways. The encoded protein can be further processed to form a smaller cleavage product, hippocampal cholinergic neurostimulating peptide (HCNP), which may be involved in neural development. This gene has been implicated in numerous human cancers and may act as a metastasis suppressor gene. Multiple pseudogenes of this gene have been identified in the genome. [provided by RefSeq, Jul 2015]

GeneCards Summary for PEBP1 Gene

PEBP1 (Phosphatidylethanolamine Binding Protein 1) is a Protein Coding gene. Diseases associated with PEBP1 include Myeloid Sarcoma and Lung Cancer. Among its related pathways are RET signaling and Aurora B signaling. Gene Ontology (GO) annotations related to this gene include enzyme binding. An important paralog of this gene is MRPL38.

UniProtKB/Swiss-Prot Summary for PEBP1 Gene

  • Binds ATP, opioids and phosphatidylethanolamine. Has lower affinity for phosphatidylinositol and phosphatidylcholine. Serine protease inhibitor which inhibits thrombin, neuropsin and chymotrypsin but not trypsin, tissue type plasminogen activator and elastase (By similarity). Inhibits the kinase activity of RAF1 by inhibiting its activation and by dissociating the RAF1/MEK complex and acting as a competitive inhibitor of MEK phosphorylation.
  • HCNP may be involved in the function of the presynaptic cholinergic neurons of the central nervous system. HCNP increases the production of choline acetyltransferase but not acetylcholinesterase. Seems to be mediated by a specific receptor (By similarity).

Gene Wiki entry for PEBP1 Gene

Additional gene information for PEBP1 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PEBP1 Gene

Genomics for PEBP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PEBP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J118134 Promoter/Enhancer 1.7 EPDnew ENCODE CraniofacialAtlas 256.5 +1.3 1322 5.3 SP1 MYC ZNF600 ZNF580 ZNF592 KLF9 POLR2A CEBPA ATF3 ZSCAN16 VSIG10 PEBP1 HSALNG0094414 LOC101928274 lnc-TAOK3-1-002 piR-43107-077 RFC5 WSB2 SUDS3 TAOK3
GH12J118370 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 8.4 +238.0 238039 8.7 BCLAF1 SP1 ZNF654 NCOR1 ZNF207 MYC ZNF600 IKZF1 ZNF580 ZNF592 SUDS3 TAOK3 lnc-VSIG10-4 RFC5 PEBP1 ENSG00000270482 SRRM4
GH12J118355 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.4 +221.6 221586 5.3 ZNF207 NCOR1 MYC ZNF580 ZNF592 ATF2 ZNF10 NFIC YY1 CEBPB TAOK3 HSALNG0094421 SUDS3 RFC5 PEBP1 HSALNG0094420 lnc-VSIG10-4
GH12J118187 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas 6.6 +53.2 53174 3.8 POLR2A TAL1 JUND ZFP91 PRDM10 SPI1 ZNF384 ZBTB33 RFX1 ATF2 HSALNG0094417 KSR2 PEBP1 VSIG10 lnc-VSIG10-1 TAOK3
GH12J118328 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 6 +194.5 194490 3.4 MYC NCOR1 IKZF1 NFIC TRIM22 HES1 BHLHE40 MBD2 ARNT GABPA SUDS3 TAOK3 PEBP1 HSALNG0094419 HE856110 lnc-VSIG10-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PEBP1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for PEBP1

Top Transcription factor binding sites by QIAGEN in the PEBP1 gene promoter:
  • AP-1
  • ATF-2
  • c-Fos
  • c-Jun
  • PPAR-gamma1
  • PPAR-gamma2

Genomic Locations for PEBP1 Gene

Latest Assembly
chr12:118,136,124-118,145,584
(GRCh38/hg38)
Size:
9,461 bases
Orientation:
Plus strand

Previous Assembly
chr12:118,573,929-118,583,389
(GRCh37/hg19 by Entrez Gene)
Size:
9,461 bases
Orientation:
Plus strand

chr12:118,573,663-118,583,389
(GRCh37/hg19 by Ensembl)
Size:
9,727 bases
Orientation:
Plus strand

Genomic View for PEBP1 Gene

Genes around PEBP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PEBP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PEBP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PEBP1 Gene

Proteins for PEBP1 Gene

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  • Protein details for PEBP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P30086-PEBP1_HUMAN
    Recommended name:
    Phosphatidylethanolamine-binding protein 1
    Protein Accession:
    P30086
    Secondary Accessions:
    • B2R4S1

    Protein attributes for PEBP1 Gene

    Size:
    187 amino acids
    Molecular mass:
    21057 Da
    Quaternary structure:
    • Has a tendency to form dimers by disulfide cross-linking (By similarity). Interacts with RAF1 and this interaction is enhanced if RAF1 is phosphorylated on residues 'Ser-338', 'Ser-339', 'Tyr-340' and 'Tyr-341'. Interacts with ALOX15; in response to IL13/interleukin-13, prevents the interaction of PEBP1 with RAF1 to activate the ERK signaling cascade.

    Three dimensional structures from OCA and Proteopedia for PEBP1 Gene

neXtProt entry for PEBP1 Gene

Protein Expression for PEBP1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for PEBP1 Gene

  • Ubiquitination at Lys7, Lys47, Lys113, and Lys132
  • Modification sites at PhosphoSitePlus

Other Protein References for PEBP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibodies for research

No data available for DME Specific Peptides for PEBP1 Gene

Domains & Families for PEBP1 Gene

Gene Families for PEBP1 Gene

Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for PEBP1 Gene

InterPro:
Blocks:
  • Phosphatidylethanolamine-binding protein

Suggested Antigen Peptide Sequences for PEBP1 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ51535, highly similar to Phosphatidylethanolamine-binding protein 1 (B4DRT4_HUMAN)
  • Raf kinase inhibitor protein (PEBP1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P30086

UniProtKB/Swiss-Prot:

PEBP1_HUMAN :
  • Belongs to the phosphatidylethanolamine-binding protein family.
Family:
  • Belongs to the phosphatidylethanolamine-binding protein family.
genes like me logo Genes that share domains with PEBP1: view

Function for PEBP1 Gene

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  6. Cell Lines for research

Molecular function for PEBP1 Gene

UniProtKB/Swiss-Prot Function:
Binds ATP, opioids and phosphatidylethanolamine. Has lower affinity for phosphatidylinositol and phosphatidylcholine. Serine protease inhibitor which inhibits thrombin, neuropsin and chymotrypsin but not trypsin, tissue type plasminogen activator and elastase (By similarity). Inhibits the kinase activity of RAF1 by inhibiting its activation and by dissociating the RAF1/MEK complex and acting as a competitive inhibitor of MEK phosphorylation.
UniProtKB/Swiss-Prot Function:
HCNP may be involved in the function of the presynaptic cholinergic neurons of the central nervous system. HCNP increases the production of choline acetyltransferase but not acetylcholinesterase. Seems to be mediated by a specific receptor (By similarity).

Phenotypes From GWAS Catalog for PEBP1 Gene

Gene Ontology (GO) - Molecular Function for PEBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003723 RNA binding HDA 22658674
GO:0004867 serine-type endopeptidase inhibitor activity IEA --
GO:0005515 protein binding IPI 17097642
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with PEBP1: view
genes like me logo Genes that share phenotypes with PEBP1: view

Animal Models for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PEBP1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PEBP1 Gene

Localization for PEBP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PEBP1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PEBP1 gene
Compartment Confidence
nucleus 5
cytosol 5
extracellular 4
plasma membrane 3
cytoskeleton 2
mitochondrion 2
endoplasmic reticulum 2
peroxisome 1
endosome 1
lysosome 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for PEBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus HDA 21630459
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
GO:0070062 extracellular exosome HDA 19056867
genes like me logo Genes that share ontologies with PEBP1: view

Pathways & Interactions for PEBP1 Gene

PathCards logo

SuperPathways for PEBP1 Gene

SuperPathway Contained pathways
1 RET signaling
Frs2-mediated activation
.95
GRB2 events in EGFR signaling
.95
MAPK1/MAPK3 signaling
.95
Prolonged ERK activation events
.95
RAF/MAP kinase cascade
.95
SHC1 events in EGFR signaling
.95
Signaling by Leptin
.95
SOS-mediated signalling
.95
VEGFR2 mediated cell proliferation
.95
ARMS-mediated activation
.95
Signalling to ERKs
.95
Signalling to p38 via RIT and RIN
.95
Signalling to RAS
.95
Interleukin receptor SHC signaling
.95
Interleukin-3, 5 and GM-CSF signaling
.94
Interleukin-2 signaling
.94
Downstream signal transduction
.94
Signaling by PDGF
.94
DAP12 signaling
.92
RET signaling
.92
Insulin receptor signalling cascade
.92
Signaling by Insulin receptor
.92
IRS-mediated signalling
.91
Signaling by EGFR
.90
FCERI mediated MAPK activation
.90
IGF1R signaling cascade
.90
IRS-related events triggered by IGF1R
.90
Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)
.90
DAP12 interactions
.89
NCAM signaling for neurite out-growth
.89
NGF signalling via TRKA from the plasma membrane
.87
MAPK family signaling cascades
.87
Signaling by SCF-KIT
.85
Signalling by NGF
.81
Fc epsilon receptor (FCERI) signaling
.79
VEGFA-VEGFR2 Pathway
.78
Signaling by VEGF
.76
Gastrin-CREB signalling pathway via PKC and MAPK
.55
2 Paradoxical activation of RAF signaling by kinase inactive BRAF
MAP2K and MAPK activation
.90
Paradoxical activation of RAF signaling by kinase inactive BRAF
.90
Signaling by high-kinase activity BRAF mutants
.90
Signaling by moderate kinase activity BRAF mutants
.90
Signaling by RAS mutants
.78
3 Developmental Biology
Axon guidance
.51
Developmental Biology
.51
4 Cytokine Signaling in Immune system
Cytokine Signaling in Immune system
.69
Signaling by Interleukins
.69
5 HIV Life Cycle
Disease
.45
Diseases of signal transduction
.43
genes like me logo Genes that share pathways with PEBP1: view

Pathways by source for PEBP1 Gene

1 Qiagen pathway for PEBP1 Gene
  • Phospholipase-C Pathway
1 Cell Signaling Technology pathway for PEBP1 Gene

SIGNOR curated interactions for PEBP1 Gene

Inactivates:
Is activated by:

Gene Ontology (GO) - Biological Process for PEBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000165 MAPK cascade TAS --
GO:0010466 negative regulation of peptidase activity IEA --
GO:0010951 negative regulation of endopeptidase activity IEA --
GO:0043409 negative regulation of MAPK cascade IBA 21873635
genes like me logo Genes that share ontologies with PEBP1: view

Drugs & Compounds for PEBP1 Gene

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(14) Drugs for PEBP1 Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Copper Approved, Investigational Pharma Target 276
Omega-3-carboxylic acids Approved, Investigational Pharma Carrier, binder 0
Methicillin Acyl-Serine Experimental Pharma Target 0
Nitrocefin Acyl-Serine Experimental Pharma Target 0
Penicillin G Acyl-Serine Experimental Pharma Target 0

(18) Additional Compounds for PEBP1 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
CE(22:0)
  • 1-Tetradecanoyl-2-octadecanoyl-sn-glycero-3-phosphocholine
  • GPCho(14:0/18:0)
  • Phosphatidylcholine(14:0/18:0)
  • 1-Myristoyl-2-stearoylphosphatidylcholine
  • 1m-2S-PC
 61510-09-6
Hydroxyclomipramine
  • 1-(1Z-Octadecenyl)-2-(5Z,8Z,11Z,14Z- eicosatetraenoyl)-sn-glycero-3-phosphoethanolamine
  • 1-(1Z-Octadecenyl)-2-(5Z,8Z,11Z,14Z-icosatetraenoyl)-sn-glycero-3-phosphoethanolamine zwitterion
  • 1-(1-Enyl-stearoyl)-2-arachidonoyl-sn-glycero-3-phosphoethanolamine
  • 1-(1Z-Octadecenyl)-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphoethanolamine
  • 1-Alkenyl-2-acyl-glycerophosphoethanolamine
 97859-69-3
LysoPE(P-16:0/0:0)
  • 1-(1Z-Hexadecenyl)-lysophosphatidylethanolamine
  • 1-(1Z-Hexadecenyl)-sn-glycero-3-phosphoethanolamine
  • LPE(16:1)
  • LPE(p-16:0)
  • LPE(p-16:0/0:0)
 174062-72-7
PC(18:1(9Z)e/2:0)
  • (2-Acetyloxy-3-octadec-9-enoxypropyl) 2-trimethylazaniumylethyl phosphate
  • 2-Acetyl-1-(9Z-octadecenyl)-sn-glycero-3-phosphocholine
  • PC(O-18:1(9Z)/2:0)
PC(20:2(11Z,14Z)/18:1(11Z))
  • Phosphatidylcholine(20:2/18:1)
  • GPCho(20:2/18:1)
  • Phosphatidylcholine(38:3)
  • PC(38:3)
  • Lecithin
genes like me logo Genes that share compounds with PEBP1: view

Transcripts for PEBP1 Gene

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mRNA/cDNA for PEBP1 Gene

1 REFSEQ mRNAs :
19 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PEBP1

Alternative Splicing Database (ASD) splice patterns (SP) for PEBP1 Gene

No ASD Table

Relevant External Links for PEBP1 Gene

GeneLoc Exon Structure for
PEBP1

Expression for PEBP1 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PEBP1 Gene

mRNA expression in normal human tissues for PEBP1 Gene
mRNA expression by BioGPS for PEBP1 GenemRNA expression by GTEx for PEBP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PEBP1 Gene

This gene is overexpressed in Adrenal Gland (x4.2).

Protein differential expression in normal tissues from HIPED for PEBP1 Gene

This gene is overexpressed in Liver, secretome (6.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for PEBP1 Gene



Protein tissue co-expression partners for PEBP1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PEBP1

SOURCE GeneReport for Unigene cluster for PEBP1 Gene:

Hs.433863

Evidence on tissue expression from TISSUES for PEBP1 Gene

  • Nervous system(5)
  • Lung(4.9)
  • Liver(4.8)
  • Pancreas(4.7)
  • Skin(4.3)
  • Eye(4.1)
  • Kidney(3.5)
  • Heart(3.4)
  • Intestine(3.4)
  • Adrenal gland(3.4)
  • Muscle(3.1)
  • Thyroid gland(3)
  • Lymph node(2.8)
  • Stomach(2.6)
  • Spleen(2.4)
  • Blood(2.4)
  • Bone marrow(2.3)
genes like me logo Genes that share expression patterns with PEBP1: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for PEBP1 Gene

Orthologs for PEBP1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PEBP1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia PEBP1 29 30
  • 99.47 (n)
 OneToOne
Cow
(Bos Taurus)
 Mammalia PEBP1 29 30
  • 89.84 (n)
 OneToOne
Dog
(Canis familiaris)
 Mammalia PEBP1 29 30
  • 89.13 (n)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Pebp1 29 16 30
  • 86.1 (n)
 OneToMany
Pbp2 30
  • 84 (a)
 OneToMany
Rat
(Rattus norvegicus)
 Mammalia Pebp1 29
  • 83.42 (n)
Oppossum
(Monodelphis domestica)
 Mammalia PEBP1 30
  • 63 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia -- 30
  • 13 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves PEBP1 29 30
  • 75.76 (n)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia PEBP1 30
  • 58 (a)
 OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
 Amphibia pebp1 29
  • 71.53 (n)
Zebrafish
(Danio rerio)
 Actinopterygii pebp1 29 30
  • 68.98 (n)
 OneToOne
zgc56033 29
Fruit Fly
(Drosophila melanogaster)
 Insecta CG10298 29 30
  • 59.8 (n)
 OneToOne
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP012962 29
  • 58.49 (n)
Worm
(Caenorhabditis elegans)
 Secernentea F40A3.3 30
  • 41 (a)
 OneToOne
Baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes -- 32
Sea Squirt
(Ciona savignyi)
 Ascidiacea CSA.7271 30
  • 48 (a)
 OneToOne
Species where no ortholog for PEBP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)

Evolution for PEBP1 Gene

ENSEMBL:
Gene Tree for PEBP1 (if available)
TreeFam:
Gene Tree for PEBP1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for PEBP1: view image
Alliance of Genome Resources:
Additional Orthologs for PEBP1

Paralogs for PEBP1 Gene

Paralogs for PEBP1 Gene

(2) SIMAP similar genes for PEBP1 Gene using alignment to 1 proteins:

  • PEBP1_HUMAN

Pseudogenes.org Pseudogenes for PEBP1 Gene

genes like me logo Genes that share paralogs with PEBP1: view

Variants for PEBP1 Gene

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Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PEBP1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
rs1050625 Benign: not provided 118,144,672(+) C/T
NM_002567.4(PEBP1):c.433C>T (p.His145Tyr) 		MISSENSE
rs55716409 Benign: not provided 118,139,489(+) A/G
NM_002567.4(PEBP1):c.284A>G (p.Asn95Ser) 		MISSENSE
VAR_006048 -- p.Ser9Asn

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PEBP1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PEBP1 Gene

Variant ID Type Subtype PubMed ID
esv3581916 CNV gain 25503493

Variation tolerance for PEBP1 Gene

Residual Variation Intolerance Score: 45.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.12; 38.57% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PEBP1 Gene

Human Gene Mutation Database (HGMD)
PEBP1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PEBP1
Leiden Open Variation Database (LOVD)
PEBP1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PEBP1 Gene

Disorders for PEBP1 Gene

MalaCards: The human disease database

(5) MalaCards diseases for PEBP1 Gene - From: COP and GCD

Disorder Aliases PubMed IDs
myeloid sarcoma
  • chloroma
lung cancer
  • lung cancer, susceptibility to
alzheimer disease
  • ad
prostate cancer
  • prostate cancer, somatic
griscelli syndrome, type 3
  • gs3
- elite association - COSMIC cancer census association via MalaCards
Search PEBP1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for PEBP1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with PEBP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PEBP1 Gene

Publications for PEBP1 Gene

  1. Function from structure? The crystal structure of human phosphatidylethanolamine-binding protein suggests a role in membrane signal transduction. (PMID: 9782050) Banfield MJ … Brady RL (Structure (London, England : 1993) 1998) 3 4 22
  2. Sequence homology of rat and human HCNP precursor proteins, bovine phosphatidylethanolamine-binding protein and rat 23-kDa protein associated with the opioid-binding protein. (PMID: 7637590) Tohdoh N … Ojika K (Brain research. Molecular brain research 1995) 3 4 22
  3. Amino acid sequence of the Homo sapiens brain 21-23-kDa protein (neuropolypeptide h3), comparison with its counterparts from Rattus norvegicus and Bos taurus species, and expression of its mRNA in different tissues. (PMID: 7807553) Seddiqi N … Schoentgen F (Journal of molecular evolution 1994) 3 4 22
  4. A human cDNA sequence homologue of bovine phosphatidylethanolamine-binding protein. (PMID: 8144042) Hori N … Matsubara K (Gene 1994) 3 4 22
  5. 15-Lipoxygenase 1 interacts with phosphatidylethanolamine-binding protein to regulate MAPK signaling in human airway epithelial cells. (PMID: 21831839) Zhao J … Wenzel SE (Proceedings of the National Academy of Sciences of the United States of America 2011) 3 4

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