PDXP-DT Gene (RNA Gene)

PDXP Divergent Transcript

GC22M045659
GIFtS:
9
See more...

Aliases for PDXP-DT Gene

Subcategory (RNA class) for PDXP-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PDXP-DT Gene

  • PDXP Divergent Transcript 2 3
  • Novel Transcript 5
  • NONHSAG033885.2 91
  • HSALNG0135333 164
  • Lnc-LGALS2-1 165
  • Z83844.2 5

External Ids for PDXP-DT Gene

Summaries for PDXP-DT Gene

GeneCards Summary for PDXP-DT Gene

PDXP-DT (PDXP Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PDXP-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PDXP-DT Gene

Genomics for PDXP-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PDXP-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PDXP-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PDXP-DT Gene

Genomic Locations for PDXP-DT Gene
chr22:37,641,832-37,658,378
(GRCh38/hg38)
Size:
16,547 bases
Orientation:
Minus strand
chr22:38,037,839-38,054,384
(GRCh37/hg19)
Size:
16,546 bases
Orientation:
Minus strand

Genomic View for PDXP-DT Gene

Genes around PDXP-DT on UCSC Golden Path with GeneCards custom track
PDXP-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PDXP-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDXP-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PDXP-DT Gene

Proteins for PDXP-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for PDXP-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDXP-DT Gene

Domains & Families for PDXP-DT Gene

Gene Families for PDXP-DT Gene

HGNC:
genes like me logo Genes that share domains with PDXP-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PDXP-DT Gene

Function for PDXP-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for PDXP-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDXP-DT Gene

Localization for PDXP-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PDXP-DT Gene

Pathways & Interactions for PDXP-DT Gene

PathCards logo

SuperPathways for PDXP-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for PDXP-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PDXP-DT Gene

Drugs & Compounds for PDXP-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PDXP-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PDXP-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003D5F5D_9606 lncRNA 1945 4

RefSeq: NR_109952,

Ensembl: ENST00000456099 (view in UCSC) ,

LNCipedia: lnc-LGALS2-1:1,

NONCODE: NONHSAT086618.2,

URS00008BBBB1_9606 lncRNA 1945 3

LncBook: HSALNT0277727,

LNCipedia: lnc-LGALS2-1:2,

NONCODE: NONHSAT086619.2,

URS00009BA1CE_9606 lncRNA 1945 2

LncBook: HSALNT0277728,

NONCODE: NONHSAT192904.1,

URS00008C3C0F_9606 lncRNA 591 2

LNCipedia: lnc-LGALS2-1:3,

NONCODE: NONHSAT086620.2,

PDXP-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PDXP-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PDXP-DT Gene

No ASD Table

Relevant External Links for PDXP-DT Gene

GeneLoc Exon Structure for
PDXP-DT

Expression for PDXP-DT Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PDXP-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDXP-DT Gene

Orthologs for PDXP-DT Gene

Evolution for PDXP-DT Gene

ENSEMBL:
Gene Tree for PDXP-DT (if available)
TreeFam:
Gene Tree for PDXP-DT (if available)

No data available for Orthologs for PDXP-DT Gene

Paralogs for PDXP-DT Gene

No data available for Paralogs for PDXP-DT Gene

Variants for PDXP-DT Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PDXP-DT Gene

SNP ID Clinical significance and condition Chr 22 pos Variation AA Info Type
737803 Likely Benign: not provided 37,653,770(-) C/T INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for PDXP-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for PDXP-DT Gene

Variant ID Type Subtype PubMed ID
esv2758838 CNV loss 17122850
nsv1057617 CNV gain 25217958
nsv1072636 CNV deletion 25765185
nsv471197 CNV loss 18288195
nsv589006 CNV loss 21841781
nsv829203 CNV loss 20364138
nsv834191 CNV loss 17160897

Additional Variant Information for PDXP-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PDXP-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PDXP-DT Gene

Disorders for PDXP-DT Gene

Additional Disease Information for PDXP-DT

Open Targets Platform

No disorders were found for PDXP-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PDXP-DT Gene

Publications for PDXP-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for PDXP-DT Gene

Products for PDXP-DT Gene

Sources for PDXP-DT Gene