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Aliases for PDXDC2P-NPIPB14P Gene

Aliases for PDXDC2P-NPIPB14P Gene

  • Nuclear Pore Complex-Interacting Protein 3 5

External Ids for PDXDC2P-NPIPB14P Gene

Summaries for PDXDC2P-NPIPB14P Gene

Entrez Gene Summary for PDXDC2P-NPIPB14P Gene

  • This locus represents naturally-occurring readthrough transcription between two pseudogenes, PDXDC2P (pyridoxal dependent decarboxylase domain containing 2, pseudogene) and NPIPB14P (nuclear pore complex interacting protein family, member B14, pseudogene). The individual pseudogene loci are not curated as transcribed regions. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Feb 2017]

GeneCards Summary for PDXDC2P-NPIPB14P Gene

PDXDC2P-NPIPB14P (Nuclear Pore Complex-Interacting Protein) is a Pseudogene.

Additional gene information for PDXDC2P-NPIPB14P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDXDC2P-NPIPB14P Gene

Genomics for PDXDC2P-NPIPB14P Gene

GeneHancer (GH) Regulatory Elements for PDXDC2P-NPIPB14P Gene

Promoters and enhancers for PDXDC2P-NPIPB14P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I070064 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 581.5 +0.4 396 2.5 CLOCK ATF1 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B ZNF48 GLIS2 ZNF207 PDXDC2P-NPIPB14P PDXDC2P CLEC18A NONOP1 NPIPB14P NFAT5 SF3B3 NOB1 PDPR DDX19B
GH16I069402 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 62 +657.8 657770 11.5 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 SLC30A9 ZNF213 TERF2 NFAT5 PDPR PDXDC2P-NPIPB14P NONOP1 LOC400541 PDXDC2P NPIPB14P DDX19A SNTB2
GH16I070522 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 38.7 -458.1 -458119 3.5 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 SF3B3 COG4 PDXDC2P-NPIPB14P PDXDC2P NFAT5 NONOP1 DDX19B PDPR DDX19A ZNF23
GH16I069563 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.1 +499.4 499435 7 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B NEUROD1 SIN3A NFAT5 MIR1538 NPIPB14P PDXDC2P-NPIPB14P PDXDC2P SF3B3 PDPR EXOSC6 LOC400541 NONOP1
GH16I070986 Enhancer 1.2 Ensembl ENCODE 45 -921.5 -921514 1.1 PKNOX1 ZNF2 FOS KLF13 SP3 REST SMARCA4 GLIS1 NR2C1 NBN SF3B3 PDPR PDXDC2P-NPIPB14P DDX19A LOC400541 EXOSC6 HYDIN DDX19B NPIPB14P PDXDC2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PDXDC2P-NPIPB14P on UCSC Golden Path with GeneCards custom track

Genomic Locations for PDXDC2P-NPIPB14P Gene

Genomic Locations for PDXDC2P-NPIPB14P Gene
chr16:69,976,297-70,065,948
(GRCh38/hg38)
Size:
89,652 bases
Orientation:
Minus strand

Genomic View for PDXDC2P-NPIPB14P Gene

Genes around PDXDC2P-NPIPB14P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PDXDC2P-NPIPB14P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDXDC2P-NPIPB14P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDXDC2P-NPIPB14P Gene

Proteins for PDXDC2P-NPIPB14P Gene

Post-translational modifications for PDXDC2P-NPIPB14P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDXDC2P-NPIPB14P Gene

Domains & Families for PDXDC2P-NPIPB14P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PDXDC2P-NPIPB14P Gene

Function for PDXDC2P-NPIPB14P Gene

Phenotypes From GWAS Catalog for PDXDC2P-NPIPB14P Gene

Gene Ontology (GO) - Molecular Function for PDXDC2P-NPIPB14P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016831 carboxy-lyase activity IEA --
GO:0030170 pyridoxal phosphate binding IEA --
genes like me logo Genes that share ontologies with PDXDC2P-NPIPB14P: view

Phenotypes for PDXDC2P-NPIPB14P Gene

GenomeRNAi human phenotypes for PDXDC2P-NPIPB14P:
genes like me logo Genes that share phenotypes with PDXDC2P-NPIPB14P: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDXDC2P-NPIPB14P Gene

Localization for PDXDC2P-NPIPB14P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PDXDC2P-NPIPB14P Gene

Pathways & Interactions for PDXDC2P-NPIPB14P Gene

SuperPathways for PDXDC2P-NPIPB14P Gene

No Data Available

Interacting Proteins for PDXDC2P-NPIPB14P Gene

Gene Ontology (GO) - Biological Process for PDXDC2P-NPIPB14P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019752 carboxylic acid metabolic process IEA --
genes like me logo Genes that share ontologies with PDXDC2P-NPIPB14P: view

No data available for Pathways by source and SIGNOR curated interactions for PDXDC2P-NPIPB14P Gene

Drugs & Compounds for PDXDC2P-NPIPB14P Gene

No Compound Related Data Available

Transcripts for PDXDC2P-NPIPB14P Gene

mRNA/cDNA for PDXDC2P-NPIPB14P Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PDXDC2P-NPIPB14P Gene

No ASD Table

Relevant External Links for PDXDC2P-NPIPB14P Gene

GeneLoc Exon Structure for
PDXDC2P-NPIPB14P

Expression for PDXDC2P-NPIPB14P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDXDC2P-NPIPB14P Gene

Orthologs for PDXDC2P-NPIPB14P Gene

Evolution for PDXDC2P-NPIPB14P Gene

ENSEMBL:
Gene Tree for PDXDC2P-NPIPB14P (if available)
TreeFam:
Gene Tree for PDXDC2P-NPIPB14P (if available)

No data available for Orthologs for PDXDC2P-NPIPB14P Gene

Paralogs for PDXDC2P-NPIPB14P Gene

No data available for Paralogs for PDXDC2P-NPIPB14P Gene

Variants for PDXDC2P-NPIPB14P Gene

Sequence variations from dbSNP and Humsavar for PDXDC2P-NPIPB14P Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000061114 -- 69,988,310(-) G/A intron_variant
rs1000110030 -- 70,065,267(-) T/A intron_variant
rs1000121406 -- 70,065,481(-) T/G intron_variant
rs1000270727 -- 70,059,801(-) T/C intron_variant
rs1000288324 -- 70,053,339(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PDXDC2P-NPIPB14P Gene

Disorders for PDXDC2P-NPIPB14P Gene

Additional Disease Information for PDXDC2P-NPIPB14P

No disorders were found for PDXDC2P-NPIPB14P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PDXDC2P-NPIPB14P Gene

Publications for PDXDC2P-NPIPB14P Gene

  1. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  3. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry JR … Ong KK (Nature 2014) 3 58
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  5. Proteome-wide Identification of HtrA2/Omi Substrates. (PMID: 17266347) Vande Walle L … Vandenabeele P (Journal of proteome research 2007) 3 58

Products for PDXDC2P-NPIPB14P Gene

Sources for PDXDC2P-NPIPB14P Gene

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