This locus represents naturally-occurring readthrough transcription between two pseudogenes, PDXDC2P (pyridoxal dependent decarboxylase domain containing 2, pseudogene) and NPIPB14P (nuclear pore complex interacting protein family, member B14, pseudogene). The individual pseudogene loci are not curated as transcribed regions. Readthrough transcripts likely do not encode functio... See more...

Aliases for PDXDC2P-NPIPB14P Gene

Aliases for PDXDC2P-NPIPB14P Gene

  • Nuclear Pore Complex-Interacting Protein 3
  • Pyridoxal Dependent Decarboxylase Domain Containing 2, Pseudogene 3
  • Novel Transcript 5
  • AC009022.1 5

External Ids for PDXDC2P-NPIPB14P Gene

Summaries for PDXDC2P-NPIPB14P Gene

Entrez Gene Summary for PDXDC2P-NPIPB14P Gene

  • This locus represents naturally-occurring readthrough transcription between two pseudogenes, PDXDC2P (pyridoxal dependent decarboxylase domain containing 2, pseudogene) and NPIPB14P (nuclear pore complex interacting protein family, member B14, pseudogene). The individual pseudogene loci are not curated as transcribed regions. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Feb 2017]

GeneCards Summary for PDXDC2P-NPIPB14P Gene

PDXDC2P-NPIPB14P (Nuclear Pore Complex-Interacting Protein) is a Pseudogene.

Additional gene information for PDXDC2P-NPIPB14P Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PDXDC2P-NPIPB14P Gene

Genomics for PDXDC2P-NPIPB14P Gene

GeneHancer (GH) Regulatory Elements for PDXDC2P-NPIPB14P Gene

Promoters and enhancers for PDXDC2P-NPIPB14P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PDXDC2P-NPIPB14P on UCSC Golden Path with GeneCards custom track

Genomic Locations for PDXDC2P-NPIPB14P Gene

Genomic Locations for PDXDC2P-NPIPB14P Gene
chr16:69,976,297-70,065,948
(GRCh38/hg38)
Size:
89,652 bases
Orientation:
Minus strand

Genomic View for PDXDC2P-NPIPB14P Gene

Genes around PDXDC2P-NPIPB14P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PDXDC2P-NPIPB14P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDXDC2P-NPIPB14P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDXDC2P-NPIPB14P Gene

Proteins for PDXDC2P-NPIPB14P Gene

Post-translational modifications for PDXDC2P-NPIPB14P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDXDC2P-NPIPB14P Gene

Domains & Families for PDXDC2P-NPIPB14P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PDXDC2P-NPIPB14P Gene

Function for PDXDC2P-NPIPB14P Gene

Phenotypes From GWAS Catalog for PDXDC2P-NPIPB14P Gene

Gene Ontology (GO) - Molecular Function for PDXDC2P-NPIPB14P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008117 sphinganine-1-phosphate aldolase activity IBA 21873635
GO:0016831 carboxy-lyase activity IEA --
GO:0030170 pyridoxal phosphate binding IBA 21873635
genes like me logo Genes that share ontologies with PDXDC2P-NPIPB14P: view
genes like me logo Genes that share phenotypes with PDXDC2P-NPIPB14P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDXDC2P-NPIPB14P Gene

Localization for PDXDC2P-NPIPB14P Gene

Gene Ontology (GO) - Cellular Components for PDXDC2P-NPIPB14P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IBA 21873635
genes like me logo Genes that share ontologies with PDXDC2P-NPIPB14P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for PDXDC2P-NPIPB14P Gene

Pathways & Interactions for PDXDC2P-NPIPB14P Gene

PathCards logo

SuperPathways for PDXDC2P-NPIPB14P Gene

No Data Available

Gene Ontology (GO) - Biological Process for PDXDC2P-NPIPB14P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001667 ameboidal-type cell migration IBA 21873635
GO:0006665 sphingolipid metabolic process IBA 21873635
GO:0019752 carboxylic acid metabolic process IEA --
GO:0030149 sphingolipid catabolic process IBA 21873635
genes like me logo Genes that share ontologies with PDXDC2P-NPIPB14P: view

No data available for Pathways by source and SIGNOR curated interactions for PDXDC2P-NPIPB14P Gene

Drugs & Compounds for PDXDC2P-NPIPB14P Gene

No Compound Related Data Available

Transcripts for PDXDC2P-NPIPB14P Gene

mRNA/cDNA for PDXDC2P-NPIPB14P Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PDXDC2P-NPIPB14P Gene

No ASD Table

Relevant External Links for PDXDC2P-NPIPB14P Gene

GeneLoc Exon Structure for
PDXDC2P-NPIPB14P

Expression for PDXDC2P-NPIPB14P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDXDC2P-NPIPB14P Gene

Orthologs for PDXDC2P-NPIPB14P Gene

Evolution for PDXDC2P-NPIPB14P Gene

ENSEMBL:
Gene Tree for PDXDC2P-NPIPB14P (if available)
TreeFam:
Gene Tree for PDXDC2P-NPIPB14P (if available)

No data available for Orthologs for PDXDC2P-NPIPB14P Gene

Paralogs for PDXDC2P-NPIPB14P Gene

No data available for Paralogs for PDXDC2P-NPIPB14P Gene

Variants for PDXDC2P-NPIPB14P Gene

Sequence variations from dbSNP and Humsavar for PDXDC2P-NPIPB14P Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000061114 -- 69,988,310(-) G/A intron_variant
rs1000110030 -- 70,065,267(-) T/A intron_variant
rs1000121406 -- 70,065,481(-) T/G intron_variant
rs1000270727 -- 70,059,801(-) T/C intron_variant
rs1000288324 -- 70,053,339(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PDXDC2P-NPIPB14P Gene

Disorders for PDXDC2P-NPIPB14P Gene

No disorders were found for PDXDC2P-NPIPB14P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PDXDC2P-NPIPB14P Gene

Publications for PDXDC2P-NPIPB14P Gene

  1. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 56
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 56
  3. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry JR … Ong KK (Nature 2014) 3 56
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 56
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3 56

No data available for External Links for PDXDC2P-NPIPB14P Gene

Products for PDXDC2P-NPIPB14P Gene

Sources for PDXDC2P-NPIPB14P Gene