Aliases for PDE9A-AS1 Gene

Subcategory (RNA class) for PDE9A-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PDE9A-AS1 Gene

  • PDE9A Antisense RNA 1 2 3
  • NONHSAG032951 92
  • HSALNG0133338 167
  • Lnc-WDR4-5 168
  • PDE9A-AS1 2

External Ids for PDE9A-AS1 Gene

Summaries for PDE9A-AS1 Gene

GeneCards Summary for PDE9A-AS1 Gene

PDE9A-AS1 (PDE9A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PDE9A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PDE9A-AS1 Gene

Genomics for PDE9A-AS1 Gene

GeneHancer (GH) Regulatory Elements for PDE9A-AS1 Gene

Promoters and enhancers for PDE9A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J042741 Enhancer 0.2 Ensembl 500.7 +0.6 621 0.4 ENSG00000225731 PDE9A-AS1 PDE9A
GH21J042736 Enhancer 1 ENCODE dbSUPER 0.7 +4.4 4351 2.9 FOXK2 POLR2G NCOR1 KDM6A TCF7 ZBTB25 SKI ZBTB26 ZSCAN9 FOXA2 PRDM15 WDR4 ENSG00000233754 U2AF1 RRP1B ENSG00000225731 PDE9A PDE9A-AS1 piR-32214-431
GH21J042745 Enhancer 1.1 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -5.2 -5194 3.8 EZH2 CTCF SPI1 ZFHX2 ZNF18 MAX EGR2 RAD21 PRDM10 CBX8 PDE9A LINC00313 PKNOX1 UBASH3A TFF2 PDE9A-AS1 piR-30289
GH21J042732 Enhancer 1 ENCODE dbSUPER 0.4 +8.2 8247 2.5 EP300 FOXK2 POLR2G NCOR1 TEAD4 TCF7 FOXA1 SKI TEAD1 TBX3 RF00017-3716 piR-32214-431 NDUFV3 PDE9A ENSG00000225731 PDE9A-AS1
GH21J042750 Enhancer 0.4 CraniofacialAtlas 0.4 -8.6 -8569 0.2 NR2F1 NR2F6 NR2C1 PDE9A piR-30289 PDE9A-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PDE9A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PDE9A-AS1 Gene

Genomic Locations for PDE9A-AS1 Gene
chr21:42,733,594-42,742,422
(GRCh38/hg38)
Size:
8,829 bases
Orientation:
Minus strand

Genomic View for PDE9A-AS1 Gene

Genes around PDE9A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PDE9A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDE9A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDE9A-AS1 Gene

Proteins for PDE9A-AS1 Gene

Post-translational modifications for PDE9A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDE9A-AS1 Gene

Domains & Families for PDE9A-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PDE9A-AS1 Gene

Function for PDE9A-AS1 Gene

Phenotypes From GWAS Catalog for PDE9A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDE9A-AS1 Gene

Localization for PDE9A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PDE9A-AS1 Gene

Pathways & Interactions for PDE9A-AS1 Gene

PathCards logo

SuperPathways for PDE9A-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PDE9A-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PDE9A-AS1 Gene

Drugs & Compounds for PDE9A-AS1 Gene

No Compound Related Data Available

Transcripts for PDE9A-AS1 Gene

mRNA/cDNA for PDE9A-AS1 Gene

2 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PDE9A-AS1 Gene

No ASD Table

Relevant External Links for PDE9A-AS1 Gene

GeneLoc Exon Structure for
PDE9A-AS1

Expression for PDE9A-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PDE9A-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDE9A-AS1 Gene

Orthologs for PDE9A-AS1 Gene

No data available for Orthologs and Evolution for PDE9A-AS1 Gene

Paralogs for PDE9A-AS1 Gene

No data available for Paralogs for PDE9A-AS1 Gene

Variants for PDE9A-AS1 Gene

Additional dbSNP identifiers (rs#s) for PDE9A-AS1 Gene

Additional Variant Information for PDE9A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PDE9A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PDE9A-AS1 Gene

Disorders for PDE9A-AS1 Gene

No disorders were found for PDE9A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PDE9A-AS1 Gene

Publications for PDE9A-AS1 Gene

  1. Genome-wide association study of lung function decline in adults with and without asthma. (PMID: 22424883) Imboden M … Probst-Hensch NM (The Journal of allergy and clinical immunology 2012) 3 54

No data available for Mastermind for PDE9A-AS1 Gene

Products for PDE9A-AS1 Gene

Sources for PDE9A-AS1 Gene