PDE4B-AS1 Gene (RNA Gene)

PDE4B Antisense RNA 1

GC01M066044
GIFtS:
9
See more...

Aliases for PDE4B-AS1 Gene

Subcategory (RNA class) for PDE4B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PDE4B-AS1 Gene

  • PDE4B Antisense RNA 1 2 3 5
  • PDE4B-AS1 2 5
  • NONHSAG001738.2 91
  • HSALNG0004214 164
  • Lnc-INSL5-5 165

External Ids for PDE4B-AS1 Gene

Summaries for PDE4B-AS1 Gene

GeneCards Summary for PDE4B-AS1 Gene

PDE4B-AS1 (PDE4B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PDE4B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PDE4B-AS1 Gene

Genomics for PDE4B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PDE4B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J066239 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -197.2 -197182 14.2 CTCF ZNF692 PRDM1 ZNF143 ZIC2 PATZ1 REST RAD21 IRF2 IKZF2 PDE4B-AS1 PDE4B TCTEX1D1 piR-61289-003 HSALNG0004217 SGIP1
GH01J066182 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.3 -132.4 -132382 2.2 CREB1 PRDM10 ZNF629 PRDM1 ZSCAN4 POLR2A REST ZNF501 ATF7 ZNF561 PDE4B-AS1 piR-61580-028 L13714-016 SGIP1 PDE4B
GH01J066232 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.8 -181.0 -180982 2.2 ZBTB20 SP1 CEBPB FOS JUN JUND EP300 FOSL2 RFX5 STAT3 PDE4B-AS1 piR-61289-003 HSALNG0004217 SGIP1 PDE4B
GH01J065904 Enhancer 0.8 Ensembl 9.3 +145.8 145818 1 PRDM10 LEF1 IKZF1 JUND PKNOX1 DPF2 HDAC1 SOX6 TCF12 EP300 PDE4B PDE4B-AS1 SGIP1
GH01J065978 Enhancer 0.7 Ensembl dbSUPER 10.1 +71.2 71218 1 SP1 NR3C1 NR2F2 FOSL2 ZNF513 TRIM28 SMARCA4 MAFK PDE4B-AS1 PDE4B SGIP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PDE4B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PDE4B-AS1 Gene

Genomic Locations for PDE4B-AS1 Gene
chr1:66,042,500-66,050,719
(GRCh38/hg38)
Size:
8,220 bases
Orientation:
Minus strand
chr1:66,508,183-66,516,401
(GRCh37/hg19)
Size:
8,219 bases
Orientation:
Minus strand

Genomic View for PDE4B-AS1 Gene

Genes around PDE4B-AS1 on UCSC Golden Path with GeneCards custom track
PDE4B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PDE4B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDE4B-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PDE4B-AS1 Gene

Proteins for PDE4B-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for PDE4B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDE4B-AS1 Gene

Domains & Families for PDE4B-AS1 Gene

Gene Families for PDE4B-AS1 Gene

HGNC:
genes like me logo Genes that share domains with PDE4B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PDE4B-AS1 Gene

Function for PDE4B-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for PDE4B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDE4B-AS1 Gene

Localization for PDE4B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PDE4B-AS1 Gene

Pathways & Interactions for PDE4B-AS1 Gene

PathCards logo

SuperPathways for PDE4B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PDE4B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PDE4B-AS1 Gene

Drugs & Compounds for PDE4B-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PDE4B-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PDE4B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001F2C5D_9606 lncRNA 456 5

HGNC: 40437,

RefSeq: NR_123718,

Ensembl: ENST00000424138 (view in UCSC) ,

LNCipedia: lnc-INSL5-5:1,

NONCODE: NONHSAT003749.2,

URS00009C3EC9_9606 lncRNA 456 2

LncBook: HSALNT0008344,

NONCODE: NONHSAT151740.1,

PDE4B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PDE4B-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PDE4B-AS1 Gene

No ASD Table

Relevant External Links for PDE4B-AS1 Gene

GeneLoc Exon Structure for
PDE4B-AS1

Expression for PDE4B-AS1 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PDE4B-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDE4B-AS1 Gene

Orthologs for PDE4B-AS1 Gene

Evolution for PDE4B-AS1 Gene

ENSEMBL:
Gene Tree for PDE4B-AS1 (if available)
TreeFam:
Gene Tree for PDE4B-AS1 (if available)

No data available for Orthologs for PDE4B-AS1 Gene

Paralogs for PDE4B-AS1 Gene

No data available for Paralogs for PDE4B-AS1 Gene

Variants for PDE4B-AS1 Gene

Additional dbSNP identifiers (rs#s) for PDE4B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PDE4B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3306072 CNV mobile element insertion 20981092
esv3365990 CNV insertion 20981092
nsv998127 CNV loss 25217958

Additional Variant Information for PDE4B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PDE4B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PDE4B-AS1 Gene

Disorders for PDE4B-AS1 Gene

Additional Disease Information for PDE4B-AS1

Open Targets Platform

No disorders were found for PDE4B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PDE4B-AS1 Gene

Publications for PDE4B-AS1 Gene

No publications were found for PDE4B-AS1 Gene.

No data available for Mastermind for PDE4B-AS1 Gene

Products for PDE4B-AS1 Gene

Sources for PDE4B-AS1 Gene