Aliases for PDCD4-AS1 Gene

Subcategory (RNA class) for PDCD4-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for PDCD4-AS1 Gene

  • PDCD4 Antisense RNA 1 2 3 5
  • PDCD4-AS1 2 5 165
  • NONHSAG006865.2 91
  • HSALNG0080613 164

External Ids for PDCD4-AS1 Gene

Previous GeneCards Identifiers for PDCD4-AS1 Gene

  • GC10M112628

Summaries for PDCD4-AS1 Gene

GeneCards Summary for PDCD4-AS1 Gene

PDCD4-AS1 (PDCD4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PDCD4-AS1 include Breast Cancer.

Additional gene information for PDCD4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PDCD4-AS1 Gene

Genomics for PDCD4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PDCD4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J110855 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.4 +21.9 21938 19.2 SP1 CREB1 GATAD2A PRDM10 ZNF629 REST LEF1 SOX13 IKZF1 RFX5 PDCD4 PDCD4-AS1 SHOC2 BBIP1 ADRA2A ENSG00000270589 DUSP5 ENSG00000232470 lnc-BBIP1-4 RBM20
GH10J110884 Enhancer 0.7 dbSUPER 600.7 +1.4 1409 1.3 IKZF1 FOXA1 PKNOX1 BRD9 HDAC1 SOX6 TCF12 EP300 SP1 HMBOX1 PDCD4-AS1 BBIP1 SHOC2 ADRA2A PDCD4
GH10J110887 Enhancer 0.3 Ensembl dbSUPER 600.7 +0.5 538 0.4 PDCD4-AS1 BBIP1 SHOC2 PDCD4
GH10J110832 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +47.4 47423 15 SP1 HNRNPL CREB1 GATAD2A REST SOX13 RCOR2 POLR2A BACH1 LARP7 RBM20 PDCD4 PDCD4-AS1 ENSG00000232470 SHOC2 SMC3 HSALNG0080611 LOC112268066
GH10J110818 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +65.9 65934 7 CREB1 ATF7 RFX1 FOXA1 POLR2A SCRT2 SOX13 CEBPB RAD21 HMBOX1 PDCD4 SMC3 PDCD4-AS1 ENSG00000232470 XPNPEP1 RBM20 ADRA2A HSALNG0080611 LOC112268066
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PDCD4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PDCD4-AS1 Gene

Genomic Locations for PDCD4-AS1 Gene
chr10:110,868,743-110,887,739
(GRCh38/hg38)
Size:
18,997 bases
Orientation:
Minus strand
chr10:112,628,648-112,631,991
(GRCh37/hg19)
Size:
3,344 bases
Orientation:
Minus strand

Genomic View for PDCD4-AS1 Gene

Genes around PDCD4-AS1 on UCSC Golden Path with GeneCards custom track
PDCD4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PDCD4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDCD4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDCD4-AS1 Gene

Proteins for PDCD4-AS1 Gene

Post-translational modifications for PDCD4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDCD4-AS1 Gene

Domains & Families for PDCD4-AS1 Gene

Gene Families for PDCD4-AS1 Gene

genes like me logo Genes that share domains with PDCD4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PDCD4-AS1 Gene

Function for PDCD4-AS1 Gene

Phenotypes From GWAS Catalog for PDCD4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDCD4-AS1 Gene

Localization for PDCD4-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PDCD4-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PDCD4-AS1 Gene

Pathways & Interactions for PDCD4-AS1 Gene

PathCards logo

SuperPathways for PDCD4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PDCD4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PDCD4-AS1 Gene

Drugs & Compounds for PDCD4-AS1 Gene

No Compound Related Data Available

Transcripts for PDCD4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PDCD4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000140DAA_9606 lncRNA 778 4

Ensembl: ENST00000420367 (view in UCSC) ,

LncBook: HSALNT0168149,

LNCipedia: PDCD4-AS1:1,

NONCODE: NONHSAT016365.2,

URS000075AE47_9606 lncRNA 2015 3

HGNC: 27425,

RefSeq: NR_026932,

LNCipedia: PDCD4-AS1:4,

URS00008B5F1F_9606 lncRNA 2905 2

LNCipedia: PDCD4-AS1:2,

NONCODE: NONHSAT016362.2,

URS0000D5A8AC_9606 lncRNA 2511 2

LncBook: HSALNT0168146,

LNCipedia: PDCD4-AS1:3,

URS0000D5B79B_9606 lncRNA 2141 2

LncBook: HSALNT0168143,

LNCipedia: PDCD4-AS1:6,

PDCD4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PDCD4-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PDCD4-AS1 Gene

No ASD Table

Relevant External Links for PDCD4-AS1 Gene

GeneLoc Exon Structure for
PDCD4-AS1

Expression for PDCD4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PDCD4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PDCD4-AS1 Gene

This gene is overexpressed in Whole Blood (x9.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PDCD4-AS1

SOURCE GeneReport for Unigene cluster for PDCD4-AS1 Gene:

Hs.599931
genes like me logo Genes that share expression patterns with PDCD4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDCD4-AS1 Gene

Orthologs for PDCD4-AS1 Gene

Evolution for PDCD4-AS1 Gene

ENSEMBL:
Gene Tree for PDCD4-AS1 (if available)
TreeFam:
Gene Tree for PDCD4-AS1 (if available)

No data available for Orthologs for PDCD4-AS1 Gene

Paralogs for PDCD4-AS1 Gene

No data available for Paralogs for PDCD4-AS1 Gene

Variants for PDCD4-AS1 Gene

Additional dbSNP identifiers (rs#s) for PDCD4-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PDCD4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv7211 OTHER inversion 18451855

Additional Variant Information for PDCD4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PDCD4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PDCD4-AS1 Gene

Disorders for PDCD4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PDCD4-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
breast cancer
  • breast lobular carcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with PDCD4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PDCD4-AS1 Gene

Publications for PDCD4-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for PDCD4-AS1 Gene

Sources for PDCD4-AS1 Gene