Aliases for PCYT1B-AS1 Gene

Data sources for PCYT1B-AS1 Gene:

RNA type for PCYT1B-AS1 Gene

lncRNA

Aliases for PCYT1B-AS1 Gene

External Ids for PCYT1B-AS1 Gene

Previous GeneCards Identifiers for PCYT1B-AS1 Gene

  • GC00U933437
  • GC0XP024669

Summaries for PCYT1B-AS1 Gene

GeneCards Summary for PCYT1B-AS1 Gene

PCYT1B-AS1 (PCYT1B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Actin Nucleation by ARP-WASP Complex and ERK Signaling.

Additional gene information for PCYT1B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PCYT1B-AS1 Gene

Genomics for PCYT1B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PCYT1B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ024619 Enhancer 0.5 Ensembl 13.6 -29.4 -29428 0.8 FEZF1 FOXA2 NFIA ZBTB17 SOX13 RF00017-7647 PCYT1B PCYT1B-AS1 piR-56037-117 RF00017-7645 PDK3 RF00017-7644
GH0XJ024645 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 -2.3 -2291 2.7 POLR2A BHLHE40 RFX1 SP1 TRIM28 BACH1 PCYT1B PCYT1B-AS1 H2BP7 RF00017-7644 PDK3
GH0XJ024642 Enhancer 0.7 Ensembl 0.4 -6.4 -6428 0.8 IKZF1 ATF2 JUND ATF4 DPF2 ZBTB21 ARID1B CEBPB ZNF366 BCL6B PCYT1B PCYT1B-AS1 H2BP7 RF00017-7644 PDK3
GH0XJ024662 Enhancer 0.5 ENCODE 0.4 +13.4 13442 1 IKZF1 SMAD4 TAL1 ARID1B CEBPB SP5 SOX6 SOX13 CBFA2T3 HSALNG0137063 PCYT1B PCYT1B-AS1 RF00017-7644 PDK3
GH0XJ024657 Enhancer 0.5 Ensembl 0.4 +9.2 9172 1.6 MAFF ZNF316 MAFK MAFG EMSY PCYT1B HSALNG0137063 PCYT1B-AS1 RF00017-7644 PDK3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCYT1B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PCYT1B-AS1 Gene

Latest Assembly
chrX:24,649,229-24,668,471
(GRCh38/hg38)
Size:
19,243 bases
Orientation:
Plus strand

Previous Assembly
chrX:24,668,190-24,676,354
(GRCh37/hg19 by Entrez Gene)
Size:
8,165 bases
Orientation:
Plus strand

chrX:24,668,190-24,676,354
(GRCh37/hg19 by Ensembl)
Size:
8,165 bases
Orientation:
Plus strand

Genomic View for PCYT1B-AS1 Gene

Genes around PCYT1B-AS1 on UCSC Golden Path with GeneCards custom track
PCYT1B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PCYT1B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCYT1B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCYT1B-AS1 Gene

Proteins for PCYT1B-AS1 Gene

Post-translational modifications for PCYT1B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCYT1B-AS1 Gene

Domains & Families for PCYT1B-AS1 Gene

Gene Families for PCYT1B-AS1 Gene

genes like me logo Genes that share domains with PCYT1B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PCYT1B-AS1 Gene

Function for PCYT1B-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCYT1B-AS1 Gene

Localization for PCYT1B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCYT1B-AS1 Gene

Pathways & Interactions for PCYT1B-AS1 Gene

PathCards logo

SuperPathways for PCYT1B-AS1 Gene

SuperPathway Contained pathways
1 ERK Signaling
.61
2 Actin Nucleation by ARP-WASP Complex
.35
genes like me logo Genes that share pathways with PCYT1B-AS1: view

Pathways by source for PCYT1B-AS1 Gene

2 Qiagen pathways for PCYT1B-AS1 Gene
  • Rho Family GTPases
  • RhoA Pathway

Gene Ontology (GO) - Biological Process for PCYT1B-AS1 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for PCYT1B-AS1 Gene

Drugs & Compounds for PCYT1B-AS1 Gene

No Compound Related Data Available

Transcripts for PCYT1B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PCYT1B-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000001FF4F_9606 lncRNA 277 5

RefSeq: NR_046638,

Ensembl: ENST00000432626 (view in UCSC) ,

LncBook: HSALNT0280985,

LNCipedia: PCYT1B-AS1:1,

NONCODE: NONHSAT136517.2,

URS00009AD97E_9606 lncRNA 275 2

LncBook: HSALNT0280986,

NONCODE: NONHSAT222571.1,

URS0001BCDE8D_9606 lncRNA 1255 1

LncBook: HSALNT0280984,

URS0001BEF151_9606 lncRNA 275 1

LncBook: HSALNT0280985,

URS0001BF69DD_9606 lncRNA 275 1

LncBook: HSALNT0280986,

PCYT1B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for PCYT1B-AS1 Gene

No ASD Table

Relevant External Links for PCYT1B-AS1 Gene

GeneLoc Exon Structure for
PCYT1B-AS1

No data available for mRNA/cDNA for PCYT1B-AS1 Gene

Expression for PCYT1B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PCYT1B-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PCYT1B-AS1

genes like me logo Genes that share expression patterns with PCYT1B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCYT1B-AS1 Gene

Orthologs for PCYT1B-AS1 Gene

Evolution for PCYT1B-AS1 Gene

ENSEMBL:
Gene Tree for PCYT1B-AS1 (if available)
TreeFam:
Gene Tree for PCYT1B-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PCYT1B-AS1

No data available for Orthologs for PCYT1B-AS1 Gene

Paralogs for PCYT1B-AS1 Gene

No data available for Paralogs for PCYT1B-AS1 Gene

Variants for PCYT1B-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PCYT1B-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for PCYT1B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCYT1B-AS1
Leiden Open Variation Database (LOVD)
PCYT1B-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PCYT1B-AS1 Gene

Disorders for PCYT1B-AS1 Gene

Additional Disease Information for PCYT1B-AS1

No disorders were found for PCYT1B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCYT1B-AS1 Gene

Publications for PCYT1B-AS1 Gene

No publications were found for PCYT1B-AS1 Gene.

No data available for Mastermind for PCYT1B-AS1 Gene

Products for PCYT1B-AS1 Gene

Sources for PCYT1B-AS1 Gene