Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PCNPP1 Gene

Aliases for PCNPP1 Gene

  • PEST Containing Nuclear Protein Pseudogene 1 2 3 5
  • PEST Proteolytic Signal Containing Nuclear Protein Pseudogene 3
  • PEST Containing Nuclear Protein Pseudogene 2
  • PCNPP 3

External Ids for PCNPP1 Gene

Previous HGNC Symbols for PCNPP1 Gene

  • PCNPP

Previous GeneCards Identifiers for PCNPP1 Gene

  • GC12M112105

Summaries for PCNPP1 Gene

GeneCards Summary for PCNPP1 Gene

PCNPP1 (PEST Containing Nuclear Protein Pseudogene 1) is a Pseudogene.

Additional gene information for PCNPP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCNPP1 Gene

Genomics for PCNPP1 Gene

GeneHancer (GH) Regulatory Elements for PCNPP1 Gene

Promoters and enhancers for PCNPP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J111055 Enhancer 1.9 VISTA UCNEbase FANTOM5 ENCODE 21 +613.2 613188 2.9 ZNF473 KLF14 ZNF548 MLLT1 EGR1 ZNF547 IKZF1 CREB1 ZNF600 IKZF2 ADAM1A ATXN2 IFT81 MAPKAPK5 PCNPP1 CUX2 BRAP ATXN2-AS ANAPC7 MYL2
GH12J112327 Enhancer 0.7 Ensembl 49.4 -657.4 -657422 0.4 ZNF121 ZNF404 MZF1 ZNF680 ZNF560 KLF7 ZNF501 ZNF140 ZNF316 ZNF266 PCNPP1 ADAM1A MAPKAPK5 HSPA8P14 NAA25 RPL6 ATXN2-AS HECTD4 TPCN1 TRAFD1
GH12J111424 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 16.6 +234.3 234315 23.7 SP1 ZNF121 CEBPG ZNF687 MAFK TRIM24 SP7 RELA PPARG POLR2A PIR45326 ADAM1A SH2B3 MAPKAPK5 PCNPP1 ATXN2 PHETA1 HECTD4 ALDH2 TMEM116
GH12J112417 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12 -748.7 -748722 3 CTCF ZFX ELF3 MNT SIX5 NKRF POLR2A MLLT1 CEBPG GTF2F1 ATXN2 PTPN11 RPL6 ADAM1A PCNPP1 TMEM116 GC12M112409
GH12J111367 Promoter/Enhancer 1.5 Ensembl ENCODE 12 +301.6 301578 3.6 ZNF652 SP1 ELF3 ZFX NKRF POLR2A ZNF121 CEBPG ZNF687 TFE3 PHETA1 GC12M111219 LINC02356 ADAM1A PCNPP1 ANAPC7 ATXN2 TMEM116 RNA5SP373
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PCNPP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PCNPP1 Gene

Genomic Locations for PCNPP1 Gene
chr12:111,666,924-111,670,379
(GRCh38/hg38)
Size:
3,456 bases
Orientation:
Minus strand
chr12:112,104,737-112,108,183
(GRCh37/hg19)
Size:
3,447 bases
Orientation:
Minus strand

Genomic View for PCNPP1 Gene

Genes around PCNPP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCNPP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCNPP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCNPP1 Gene

Proteins for PCNPP1 Gene

Post-translational modifications for PCNPP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCNPP1 Gene

Domains & Families for PCNPP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCNPP1 Gene

Function for PCNPP1 Gene

Phenotypes From GWAS Catalog for PCNPP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCNPP1 Gene

Localization for PCNPP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCNPP1 Gene

Pathways & Interactions for PCNPP1 Gene

PathCards logo

SuperPathways for PCNPP1 Gene

No Data Available

Interacting Proteins for PCNPP1 Gene

Gene Ontology (GO) - Biological Process for PCNPP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCNPP1 Gene

Drugs & Compounds for PCNPP1 Gene

No Compound Related Data Available

Transcripts for PCNPP1 Gene

mRNA/cDNA for PCNPP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCNPP1 Gene

No ASD Table

Relevant External Links for PCNPP1 Gene

GeneLoc Exon Structure for
PCNPP1
ECgene alternative splicing isoforms for
PCNPP1

Expression for PCNPP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCNPP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of PCNPP1 Gene:

PCNPP1
genes like me logo Genes that share expression patterns with PCNPP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCNPP1 Gene

Orthologs for PCNPP1 Gene

Evolution for PCNPP1 Gene

ENSEMBL:
Gene Tree for PCNPP1 (if available)
TreeFam:
Gene Tree for PCNPP1 (if available)

No data available for Orthologs for PCNPP1 Gene

Paralogs for PCNPP1 Gene

No data available for Paralogs for PCNPP1 Gene

Variants for PCNPP1 Gene

Additional Variant Information for PCNPP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCNPP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PCNPP1 Gene

Disorders for PCNPP1 Gene

No disorders were found for PCNPP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PCNPP1 Gene

Publications for PCNPP1 Gene

No publications were found for PCNPP1 Gene.

Products for PCNPP1 Gene

Sources for PCNPP1 Gene

Content
Loading form....